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Cluster: HRGMv2_4309_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4309_15 HRGMv2_4309_15_10 16604 18040 - GH29
CAZyme HRGMv2_4309_15 HRGMv2_4309_15_11 18074 19474 - CE20
pfam HRGMv2_4309_15 HRGMv2_4309_15_12 19671 21305 - SBP_bac_8
TF HRGMv2_4309_15 HRGMv2_4309_15_13 21347 22174 - HTH_AraC | HTH_AraC
TC HRGMv2_4309_15 HRGMv2_4309_15_14 22215 24014 - 8.A.59.2.1
TC HRGMv2_4309_15 HRGMv2_4309_15_15 24222 25172 + 3.A.1.1.10
TC HRGMv2_4309_15 HRGMv2_4309_15_16 25187 26095 + 3.A.1.1.29
STP HRGMv2_4309_15 HRGMv2_4309_15_17 26202 28148 + SBP_bac_1
CAZyme HRGMv2_4309_15 HRGMv2_4309_15_18 28284 30863 + CBM67 | GH78
CAZyme HRGMv2_4309_15 HRGMv2_4309_15_19 30870 33482 + GH106
CAZyme HRGMv2_4309_15 HRGMv2_4309_15_20 33508 35631 + GH42
pfam HRGMv2_4309_15 HRGMv2_4309_15_21 35712 37583 + DUF975 | ABC_trans_CmpB
STP HRGMv2_4309_15 HRGMv2_4309_15_22 37904 39247 + SBP_bac_1
TC HRGMv2_4309_15 HRGMv2_4309_15_23 39274 40335 + 3.A.1.1.22
TC HRGMv2_4309_15 HRGMv2_4309_15_24 40322 41248 + 3.A.1.1.41
TC HRGMv2_4309_15 HRGMv2_4309_15_25 41284 42126 + 3.A.1.1.25
Gene ID: HRGMv2_4309_15_10
Type: CAZyme
Location: 16604 - 18040 (-)
Gene ID: HRGMv2_4309_15_11
Type: CAZyme
Location: 18074 - 19474 (-)
Gene ID: HRGMv2_4309_15_12
Type: pfam
Location: 19671 - 21305 (-)
Gene ID: HRGMv2_4309_15_13
Type: TF
Location: 21347 - 22174 (-)
Gene ID: HRGMv2_4309_15_14
Type: TC
Location: 22215 - 24014 (-)
Gene ID: HRGMv2_4309_15_15
Type: TC
Location: 24222 - 25172 (+)
Gene ID: HRGMv2_4309_15_16
Type: TC
Location: 25187 - 26095 (+)
Gene ID: HRGMv2_4309_15_17
Type: STP
Location: 26202 - 28148 (+)
Gene ID: HRGMv2_4309_15_18
Type: CAZyme
Location: 28284 - 30863 (+)
Gene ID: HRGMv2_4309_15_19
Type: CAZyme
Location: 30870 - 33482 (+)
Gene ID: HRGMv2_4309_15_20
Type: CAZyme
Location: 33508 - 35631 (+)
Gene ID: HRGMv2_4309_15_21
Type: pfam
Location: 35712 - 37583 (+)
Gene ID: HRGMv2_4309_15_22
Type: STP
Location: 37904 - 39247 (+)
Gene ID: HRGMv2_4309_15_23
Type: TC
Location: 39274 - 40335 (+)
Gene ID: HRGMv2_4309_15_24
Type: TC
Location: 40322 - 41248 (+)
Gene ID: HRGMv2_4309_15_25
Type: TC
Location: 41284 - 42126 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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