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Cluster: HRGMv2_4309_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_9 HRGMv2_4309_9_23 25501 26343 + 3.A.1.3.20
TC HRGMv2_4309_9 HRGMv2_4309_9_24 26364 27161 + 3.A.1.3.20
TC HRGMv2_4309_9 HRGMv2_4309_9_25 27158 27898 + 3.A.1.3.20
NULL(UNKNOWN) HRGMv2_4309_9 HRGMv2_4309_9_26 28098 29090 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4309_9 HRGMv2_4309_9_27 29122 30891 + 8.A.59.2.1
TF HRGMv2_4309_9 HRGMv2_4309_9_28 30869 31942 + HTH_AraC | HTH_AraC
STP HRGMv2_4309_9 HRGMv2_4309_9_29 32185 33489 + SBP_bac_1
TC HRGMv2_4309_9 HRGMv2_4309_9_30 33555 34436 + 3.A.1.1.41
TC HRGMv2_4309_9 HRGMv2_4309_9_31 34451 35296 + 3.A.1.1.41
CAZyme HRGMv2_4309_9 HRGMv2_4309_9_32 35326 36585 + GH175
CAZyme HRGMv2_4309_9 HRGMv2_4309_9_33 36569 38149 + CBM91 | GH43_11
CAZyme HRGMv2_4309_9 HRGMv2_4309_9_34 38265 41294 + GH2
Gene ID: HRGMv2_4309_9_23
Type: TC
Location: 25501 - 26343 (+)
Gene ID: HRGMv2_4309_9_24
Type: TC
Location: 26364 - 27161 (+)
Gene ID: HRGMv2_4309_9_25
Type: TC
Location: 27158 - 27898 (+)
Gene ID: HRGMv2_4309_9_26
Type:
Location: 28098 - 29090 (+)
Gene ID: HRGMv2_4309_9_27
Type: TC
Location: 29122 - 30891 (+)
Gene ID: HRGMv2_4309_9_28
Type: TF
Location: 30869 - 31942 (+)
Gene ID: HRGMv2_4309_9_29
Type: STP
Location: 32185 - 33489 (+)
Gene ID: HRGMv2_4309_9_30
Type: TC
Location: 33555 - 34436 (+)
Gene ID: HRGMv2_4309_9_31
Type: TC
Location: 34451 - 35296 (+)
Gene ID: HRGMv2_4309_9_32
Type: CAZyme
Location: 35326 - 36585 (+)
Gene ID: HRGMv2_4309_9_33
Type: CAZyme
Location: 36569 - 38149 (+)
Gene ID: HRGMv2_4309_9_34
Type: CAZyme
Location: 38265 - 41294 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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