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Cluster: HRGMv2_4309_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4309_8 HRGMv2_4309_8_5 3490 5055 + CBM91 | GH43_11
STP HRGMv2_4309_8 HRGMv2_4309_8_6 5206 6486 + SBP_bac_1
TC HRGMv2_4309_8 HRGMv2_4309_8_7 6583 7464 + 3.A.1.1.32
TC HRGMv2_4309_8 HRGMv2_4309_8_8 7480 8304 + 3.A.1.1.47
TF HRGMv2_4309_8 HRGMv2_4309_8_9 8313 9155 + HTH_AraC
TC HRGMv2_4309_8 HRGMv2_4309_8_10 9152 10870 + 8.A.59.2.1
CAZyme HRGMv2_4309_8 HRGMv2_4309_8_11 10875 12926 + GH42
TC HRGMv2_4309_8 HRGMv2_4309_8_12 12944 13807 + 2.A.115.1.1
pfam HRGMv2_4309_8 HRGMv2_4309_8_13 13925 15544 + DDE_Tnp_IS66 | LZ_Tnp_IS66 | DDE_Tnp_IS66_C
NULL(UNKNOWN) HRGMv2_4309_8 HRGMv2_4309_8_14 15911 16855 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4309_8 HRGMv2_4309_8_15 16877 17635 + 9.B.158.1.1
Gene ID: HRGMv2_4309_8_5
Type: CAZyme
Location: 3490 - 5055 (+)
Gene ID: HRGMv2_4309_8_6
Type: STP
Location: 5206 - 6486 (+)
Gene ID: HRGMv2_4309_8_7
Type: TC
Location: 6583 - 7464 (+)
Gene ID: HRGMv2_4309_8_8
Type: TC
Location: 7480 - 8304 (+)
Gene ID: HRGMv2_4309_8_9
Type: TF
Location: 8313 - 9155 (+)
Gene ID: HRGMv2_4309_8_10
Type: TC
Location: 9152 - 10870 (+)
Gene ID: HRGMv2_4309_8_11
Type: CAZyme
Location: 10875 - 12926 (+)
Gene ID: HRGMv2_4309_8_12
Type: TC
Location: 12944 - 13807 (+)
Gene ID: HRGMv2_4309_8_13
Type: pfam
Location: 13925 - 15544 (+)
Gene ID: HRGMv2_4309_8_14
Type:
Location: 15911 - 16855 (+)
Gene ID: HRGMv2_4309_8_15
Type: TC
Location: 16877 - 17635 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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