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Cluster: HRGMv2_4309_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_1 HRGMv2_4309_1_1 3 2228 + 8.A.7.1.4
TF HRGMv2_4309_1 HRGMv2_4309_1_2 2307 3911 - HTH_AraC | HTH_AraC
TC HRGMv2_4309_1 HRGMv2_4309_1_3 3908 5704 - 9.B.33.1.1
STP HRGMv2_4309_1 HRGMv2_4309_1_4 5916 7214 + SBP_bac_1
TC HRGMv2_4309_1 HRGMv2_4309_1_5 7286 8155 + 3.A.1.1.25
TC HRGMv2_4309_1 HRGMv2_4309_1_6 8155 8997 + 3.A.1.1.18
CAZyme HRGMv2_4309_1 HRGMv2_4309_1_7 9044 11203 + GH2
Gene ID: HRGMv2_4309_1_1
Type: TC
Location: 3 - 2228 (+)
Gene ID: HRGMv2_4309_1_2
Type: TF
Location: 2307 - 3911 (-)
Gene ID: HRGMv2_4309_1_3
Type: TC
Location: 3908 - 5704 (-)
Gene ID: HRGMv2_4309_1_4
Type: STP
Location: 5916 - 7214 (+)
Gene ID: HRGMv2_4309_1_5
Type: TC
Location: 7286 - 8155 (+)
Gene ID: HRGMv2_4309_1_6
Type: TC
Location: 8155 - 8997 (+)
Gene ID: HRGMv2_4309_1_7
Type: CAZyme
Location: 9044 - 11203 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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