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Cluster: HRGMv2_4307_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4307_66 HRGMv2_4307_66_4 7230 7916 + 3.A.2.1.2
TC HRGMv2_4307_66 HRGMv2_4307_66_5 7941 8165 + 3.A.2.1.5
pfam HRGMv2_4307_66 HRGMv2_4307_66_6 8186 8668 + ATP-synt_B
TC HRGMv2_4307_66 HRGMv2_4307_66_7 8668 10428 + 3.A.2.1.6
TC HRGMv2_4307_66 HRGMv2_4307_66_8 10430 11326 + 3.A.2.1.1
TC HRGMv2_4307_66 HRGMv2_4307_66_9 11347 12747 + 3.A.2.1.5
TC HRGMv2_4307_66 HRGMv2_4307_66_10 12762 13169 + 3.A.2.1.1
NULL(UNKNOWN) HRGMv2_4307_66 HRGMv2_4307_66_11 13314 13922 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4307_66 HRGMv2_4307_66_12 14242 15219 + LacI
TC HRGMv2_4307_66 HRGMv2_4307_66_13 15255 16367 + 3.A.1.1.22
STP HRGMv2_4307_66 HRGMv2_4307_66_14 16398 17669 + SBP_bac_1
TC HRGMv2_4307_66 HRGMv2_4307_66_15 17684 18547 + 3.A.1.1.20
TC HRGMv2_4307_66 HRGMv2_4307_66_16 18547 19407 + 3.A.1.1.28
STP HRGMv2_4307_66 HRGMv2_4307_66_17 19434 19661 + PTS-HPr
CAZyme HRGMv2_4307_66 HRGMv2_4307_66_18 19689 21884 + GH36
CAZyme HRGMv2_4307_66 HRGMv2_4307_66_19 22015 23826 + GH13_4
TF HRGMv2_4307_66 HRGMv2_4307_66_20 23870 24589 - GntR
TC HRGMv2_4307_66 HRGMv2_4307_66_21 24841 26751 + 4.A.1.2.13
CAZyme HRGMv2_4307_66 HRGMv2_4307_66_22 26775 28427 + GH13_29
TF HRGMv2_4307_66 HRGMv2_4307_66_23 28467 29474 - LacI
TC HRGMv2_4307_66 HRGMv2_4307_66_24 29692 31107 + 4.A.1.2.9
CAZyme HRGMv2_4307_66 HRGMv2_4307_66_25 31109 33478 + GH31_15
TF HRGMv2_4307_66 HRGMv2_4307_66_26 33652 35223 + HTH_AraC
TC HRGMv2_4307_66 HRGMv2_4307_66_27 35230 37056 + 8.A.59.2.1
TC HRGMv2_4307_66 HRGMv2_4307_66_28 36998 38245 + 3.A.1.2.3
TC HRGMv2_4307_66 HRGMv2_4307_66_29 38365 39804 + 2.A.2.1.1
Gene ID: HRGMv2_4307_66_4
Type: TC
Location: 7230 - 7916 (+)
Gene ID: HRGMv2_4307_66_5
Type: TC
Location: 7941 - 8165 (+)
Gene ID: HRGMv2_4307_66_6
Type: pfam
Location: 8186 - 8668 (+)
Gene ID: HRGMv2_4307_66_7
Type: TC
Location: 8668 - 10428 (+)
Gene ID: HRGMv2_4307_66_8
Type: TC
Location: 10430 - 11326 (+)
Gene ID: HRGMv2_4307_66_9
Type: TC
Location: 11347 - 12747 (+)
Gene ID: HRGMv2_4307_66_10
Type: TC
Location: 12762 - 13169 (+)
Gene ID: HRGMv2_4307_66_11
Type:
Location: 13314 - 13922 (+)
Gene ID: HRGMv2_4307_66_12
Type: TF
Location: 14242 - 15219 (+)
Gene ID: HRGMv2_4307_66_13
Type: TC
Location: 15255 - 16367 (+)
Gene ID: HRGMv2_4307_66_14
Type: STP
Location: 16398 - 17669 (+)
Gene ID: HRGMv2_4307_66_15
Type: TC
Location: 17684 - 18547 (+)
Gene ID: HRGMv2_4307_66_16
Type: TC
Location: 18547 - 19407 (+)
Gene ID: HRGMv2_4307_66_17
Type: STP
Location: 19434 - 19661 (+)
Gene ID: HRGMv2_4307_66_18
Type: CAZyme
Location: 19689 - 21884 (+)
Gene ID: HRGMv2_4307_66_19
Type: CAZyme
Location: 22015 - 23826 (+)
Gene ID: HRGMv2_4307_66_20
Type: TF
Location: 23870 - 24589 (-)
Gene ID: HRGMv2_4307_66_21
Type: TC
Location: 24841 - 26751 (+)
Gene ID: HRGMv2_4307_66_22
Type: CAZyme
Location: 26775 - 28427 (+)
Gene ID: HRGMv2_4307_66_23
Type: TF
Location: 28467 - 29474 (-)
Gene ID: HRGMv2_4307_66_24
Type: TC
Location: 29692 - 31107 (+)
Gene ID: HRGMv2_4307_66_25
Type: CAZyme
Location: 31109 - 33478 (+)
Gene ID: HRGMv2_4307_66_26
Type: TF
Location: 33652 - 35223 (+)
Gene ID: HRGMv2_4307_66_27
Type: TC
Location: 35230 - 37056 (+)
Gene ID: HRGMv2_4307_66_28
Type: TC
Location: 36998 - 38245 (+)
Gene ID: HRGMv2_4307_66_29
Type: TC
Location: 38365 - 39804 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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