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Cluster: HRGMv2_4307_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4307_43 HRGMv2_4307_43_4 3105 3989 + 3.A.1.1.36
TC HRGMv2_4307_43 HRGMv2_4307_43_5 3979 4806 + 3.A.1.1.20
TC HRGMv2_4307_43 HRGMv2_4307_43_6 4827 5918 + 3.A.1.1.22
pfam HRGMv2_4307_43 HRGMv2_4307_43_7 5990 6796 + AP_endonuc_2
pfam HRGMv2_4307_43 HRGMv2_4307_43_8 6890 7945 + SLH
TC HRGMv2_4307_43 HRGMv2_4307_43_9 8237 11101 + 3.A.23.1.1
pfam HRGMv2_4307_43 HRGMv2_4307_43_10 11173 11811 + Aldolase
TC HRGMv2_4307_43 HRGMv2_4307_43_11 11808 12272 + 4.A.5.1.7
TC HRGMv2_4307_43 HRGMv2_4307_43_12 12308 12586 + 4.A.5.1.3
TC HRGMv2_4307_43 HRGMv2_4307_43_13 12618 13955 + 4.A.5.1.4
pfam HRGMv2_4307_43 HRGMv2_4307_43_14 13987 15624 + ILVD_EDD_N | ILV_EDD_C
pfam HRGMv2_4307_43 HRGMv2_4307_43_15 15939 16874 + AP_endonuc_2
TC HRGMv2_4307_43 HRGMv2_4307_43_16 16876 18243 + 4.A.1.2.11
TF HRGMv2_4307_43 HRGMv2_4307_43_17 18305 19042 + HTH_DeoR
pfam HRGMv2_4307_43 HRGMv2_4307_43_18 19131 19781 + Ribul_P_3_epim
TC HRGMv2_4307_43 HRGMv2_4307_43_19 19784 20275 + 4.A.3.2.5
pfam HRGMv2_4307_43 HRGMv2_4307_43_20 20283 20732 + LacAB_rpiB
TF HRGMv2_4307_43 HRGMv2_4307_43_21 20963 21964 - LacI
TC HRGMv2_4307_43 HRGMv2_4307_43_22 22369 24540 + 4.A.1.1.11
pfam HRGMv2_4307_43 HRGMv2_4307_43_23 24559 25389 + Exo_endo_phos
CAZyme HRGMv2_4307_43 HRGMv2_4307_43_24 25401 26885 + GH77
TF HRGMv2_4307_43 HRGMv2_4307_43_25 26911 27801 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4307_43 HRGMv2_4307_43_26 27933 30188 + GT35
Gene ID: HRGMv2_4307_43_4
Type: TC
Location: 3105 - 3989 (+)
Gene ID: HRGMv2_4307_43_5
Type: TC
Location: 3979 - 4806 (+)
Gene ID: HRGMv2_4307_43_6
Type: TC
Location: 4827 - 5918 (+)
Gene ID: HRGMv2_4307_43_7
Type: pfam
Location: 5990 - 6796 (+)
Gene ID: HRGMv2_4307_43_8
Type: pfam
Location: 6890 - 7945 (+)
Gene ID: HRGMv2_4307_43_9
Type: TC
Location: 8237 - 11101 (+)
Gene ID: HRGMv2_4307_43_10
Type: pfam
Location: 11173 - 11811 (+)
Gene ID: HRGMv2_4307_43_11
Type: TC
Location: 11808 - 12272 (+)
Gene ID: HRGMv2_4307_43_12
Type: TC
Location: 12308 - 12586 (+)
Gene ID: HRGMv2_4307_43_13
Type: TC
Location: 12618 - 13955 (+)
Gene ID: HRGMv2_4307_43_14
Type: pfam
Location: 13987 - 15624 (+)
Gene ID: HRGMv2_4307_43_15
Type: pfam
Location: 15939 - 16874 (+)
Gene ID: HRGMv2_4307_43_16
Type: TC
Location: 16876 - 18243 (+)
Gene ID: HRGMv2_4307_43_17
Type: TF
Location: 18305 - 19042 (+)
Gene ID: HRGMv2_4307_43_18
Type: pfam
Location: 19131 - 19781 (+)
Gene ID: HRGMv2_4307_43_19
Type: TC
Location: 19784 - 20275 (+)
Gene ID: HRGMv2_4307_43_20
Type: pfam
Location: 20283 - 20732 (+)
Gene ID: HRGMv2_4307_43_21
Type: TF
Location: 20963 - 21964 (-)
Gene ID: HRGMv2_4307_43_22
Type: TC
Location: 22369 - 24540 (+)
Gene ID: HRGMv2_4307_43_23
Type: pfam
Location: 24559 - 25389 (+)
Gene ID: HRGMv2_4307_43_24
Type: CAZyme
Location: 25401 - 26885 (+)
Gene ID: HRGMv2_4307_43_25
Type: TF
Location: 26911 - 27801 (-)
Gene ID: HRGMv2_4307_43_26
Type: CAZyme
Location: 27933 - 30188 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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