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Cluster: HRGMv2_4306_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4306_12 HRGMv2_4306_12_32 34110 34874 - GH25
STP HRGMv2_4306_12 HRGMv2_4306_12_33 35309 37582 - EAL | GGDEF | dCache_1
TC HRGMv2_4306_12 HRGMv2_4306_12_34 38165 39052 + 3.A.1.3.20
TC HRGMv2_4306_12 HRGMv2_4306_12_35 39149 39967 + 3.A.1.3.20
TC HRGMv2_4306_12 HRGMv2_4306_12_36 39970 40722 + 3.A.1.3.20
STP HRGMv2_4306_12 HRGMv2_4306_12_37 41126 42577 + GGDEF | dCache_1
pfam HRGMv2_4306_12 HRGMv2_4306_12_38 42587 43090 + Acetyltransf_1 | FR47 | Acetyltransf_6 | Acetyltransf_7 | Acetyltransf_10
TC HRGMv2_4306_12 HRGMv2_4306_12_39 43506 44759 + 2.A.37.3.3
Gene ID: HRGMv2_4306_12_32
Type: CAZyme
Location: 34110 - 34874 (-)
Gene ID: HRGMv2_4306_12_33
Type: STP
Location: 35309 - 37582 (-)
Gene ID: HRGMv2_4306_12_34
Type: TC
Location: 38165 - 39052 (+)
Gene ID: HRGMv2_4306_12_35
Type: TC
Location: 39149 - 39967 (+)
Gene ID: HRGMv2_4306_12_36
Type: TC
Location: 39970 - 40722 (+)
Gene ID: HRGMv2_4306_12_37
Type: STP
Location: 41126 - 42577 (+)
Gene ID: HRGMv2_4306_12_38
Type: pfam
Location: 42587 - 43090 (+)
Gene ID: HRGMv2_4306_12_39
Type: TC
Location: 43506 - 44759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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