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Cluster: HRGMv2_4304_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4304_41 HRGMv2_4304_41_25 22616 27697 - GH29
NULL(UNKNOWN) HRGMv2_4304_41 HRGMv2_4304_41_26 27799 27939 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4304_41 HRGMv2_4304_41_27 28270 29463 - Peripla_BP_1 | Peripla_BP_4
TC HRGMv2_4304_41 HRGMv2_4304_41_28 29597 30589 - 3.A.1.2.11
TC HRGMv2_4304_41 HRGMv2_4304_41_29 30608 32116 - 3.A.1.2.13
TC HRGMv2_4304_41 HRGMv2_4304_41_30 32475 33464 - 3.A.1.2.20
TC HRGMv2_4304_41 HRGMv2_4304_41_31 33451 35247 - 8.A.59.2.1
TF HRGMv2_4304_41 HRGMv2_4304_41_32 35251 36855 - HTH_AraC | HTH_AraC
TC HRGMv2_4304_41 HRGMv2_4304_41_33 36966 38021 - 2.A.86.1.9
Gene ID: HRGMv2_4304_41_25
Type: CAZyme
Location: 22616 - 27697 (-)
Gene ID: HRGMv2_4304_41_26
Type:
Location: 27799 - 27939 (-)
Gene ID: HRGMv2_4304_41_27
Type: pfam
Location: 28270 - 29463 (-)
Gene ID: HRGMv2_4304_41_28
Type: TC
Location: 29597 - 30589 (-)
Gene ID: HRGMv2_4304_41_29
Type: TC
Location: 30608 - 32116 (-)
Gene ID: HRGMv2_4304_41_30
Type: TC
Location: 32475 - 33464 (-)
Gene ID: HRGMv2_4304_41_31
Type: TC
Location: 33451 - 35247 (-)
Gene ID: HRGMv2_4304_41_32
Type: TF
Location: 35251 - 36855 (-)
Gene ID: HRGMv2_4304_41_33
Type: TC
Location: 36966 - 38021 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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