Cluster: HRGMv2_4304_CGC53
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4304
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4304_35 | HRGMv2_4304_35_19 | 16317 | 17339 | + | GT2 |
| TC | HRGMv2_4304_35 | HRGMv2_4304_35_20 | 17392 | 18039 | + | 3.A.1.121.4 |
| pfam | HRGMv2_4304_35 | HRGMv2_4304_35_21 | 18065 | 18994 | + | Amidase_3 | Choline_bind_3 |
| TF | HRGMv2_4304_35 | HRGMv2_4304_35_22 | 19233 | 19610 | + | GntR |
| TC | HRGMv2_4304_35 | HRGMv2_4304_35_23 | 19610 | 20470 | + | 3.A.1.149.1 |
Gene ID: HRGMv2_4304_35_19
Type: CAZyme
Location: 16317 - 17339 (+)
Type: CAZyme
Location: 16317 - 17339 (+)
Gene ID: HRGMv2_4304_35_20
Type: TC
Location: 17392 - 18039 (+)
Type: TC
Location: 17392 - 18039 (+)
Gene ID: HRGMv2_4304_35_21
Type: pfam
Location: 18065 - 18994 (+)
Type: pfam
Location: 18065 - 18994 (+)
Gene ID: HRGMv2_4304_35_22
Type: TF
Location: 19233 - 19610 (+)
Type: TF
Location: 19233 - 19610 (+)
Gene ID: HRGMv2_4304_35_23
Type: TC
Location: 19610 - 20470 (+)
Type: TC
Location: 19610 - 20470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominisplanchenecus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.