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Cluster: HRGMv2_4304_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4304_29 HRGMv2_4304_29_18 16837 18339 + 3.A.1.2.19
TC HRGMv2_4304_29 HRGMv2_4304_29_19 18367 19344 + 3.A.1.2.13
TC HRGMv2_4304_29 HRGMv2_4304_29_20 19350 20336 + 3.A.1.2.1
STP HRGMv2_4304_29 HRGMv2_4304_29_21 20361 21419 + Peripla_BP_1
CAZyme HRGMv2_4304_29 HRGMv2_4304_29_22 21500 22525 + GH179
pfam HRGMv2_4304_29 HRGMv2_4304_29_23 22550 23326 + adh_short | KR | adh_short_C2
pfam HRGMv2_4304_29 HRGMv2_4304_29_24 23341 24108 + adh_short | Epimerase | KR | adh_short_C2
CAZyme HRGMv2_4304_29 HRGMv2_4304_29_25 24172 24879 + CE14
Gene ID: HRGMv2_4304_29_18
Type: TC
Location: 16837 - 18339 (+)
Gene ID: HRGMv2_4304_29_19
Type: TC
Location: 18367 - 19344 (+)
Gene ID: HRGMv2_4304_29_20
Type: TC
Location: 19350 - 20336 (+)
Gene ID: HRGMv2_4304_29_21
Type: STP
Location: 20361 - 21419 (+)
Gene ID: HRGMv2_4304_29_22
Type: CAZyme
Location: 21500 - 22525 (+)
Gene ID: HRGMv2_4304_29_23
Type: pfam
Location: 22550 - 23326 (+)
Gene ID: HRGMv2_4304_29_24
Type: pfam
Location: 23341 - 24108 (+)
Gene ID: HRGMv2_4304_29_25
Type: CAZyme
Location: 24172 - 24879 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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