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Cluster: HRGMv2_4304_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4304_20 HRGMv2_4304_20_16 18950 21427 - GH94
TF HRGMv2_4304_20 HRGMv2_4304_20_17 21626 22366 + HTH_AraC | HTH_AraC
STP HRGMv2_4304_20 HRGMv2_4304_20_18 22526 22906 + Glyoxalase
CAZyme HRGMv2_4304_20 HRGMv2_4304_20_19 23074 27414 - CBM35 | CBM51 | GH27
NULL(UNKNOWN) HRGMv2_4304_20 HRGMv2_4304_20_20 27441 27752 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4304_20 HRGMv2_4304_20_21 27764 29287 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4304_20 HRGMv2_4304_20_22 29389 30429 - 3.A.1.2.3
pfam HRGMv2_4304_20 HRGMv2_4304_20_23 30455 31408 - Peripla_BP_4
TC HRGMv2_4304_20 HRGMv2_4304_20_24 31405 33216 - 9.B.33.1.1
TF HRGMv2_4304_20 HRGMv2_4304_20_25 33238 34848 - HTH_AraC
TC HRGMv2_4304_20 HRGMv2_4304_20_26 35138 36472 + 2.A.66.1.7
Gene ID: HRGMv2_4304_20_16
Type: CAZyme
Location: 18950 - 21427 (-)
Gene ID: HRGMv2_4304_20_17
Type: TF
Location: 21626 - 22366 (+)
Gene ID: HRGMv2_4304_20_18
Type: STP
Location: 22526 - 22906 (+)
Gene ID: HRGMv2_4304_20_19
Type: CAZyme
Location: 23074 - 27414 (-)
Gene ID: HRGMv2_4304_20_20
Type:
Location: 27441 - 27752 (-)
Gene ID: HRGMv2_4304_20_21
Type:
Location: 27764 - 29287 (-)
Gene ID: HRGMv2_4304_20_22
Type: TC
Location: 29389 - 30429 (-)
Gene ID: HRGMv2_4304_20_23
Type: pfam
Location: 30455 - 31408 (-)
Gene ID: HRGMv2_4304_20_24
Type: TC
Location: 31405 - 33216 (-)
Gene ID: HRGMv2_4304_20_25
Type: TF
Location: 33238 - 34848 (-)
Gene ID: HRGMv2_4304_20_26
Type: TC
Location: 35138 - 36472 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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