Cluster: HRGMv2_4304_CGC29
🧬 Cluster Details
- Gene Count: 33
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_4304
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_3 | 2870 | 4606 | - | 8.A.59.2.1 |
| TF | HRGMv2_4304_12 | HRGMv2_4304_12_4 | 4590 | 6179 | - | HTH_AraC |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_5 | 6271 | 12744 | - | CBM71 | GH2 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_6 | 12869 | 17638 | - | CBM32 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_7 | 17881 | 19731 | - | 2.A.16.2.2 |
| STP | HRGMv2_4304_12 | HRGMv2_4304_12_8 | 20103 | 22889 | - | HATPase_c | HisKA | Response_reg | SBP_bac_3 | SBP_bac_3 |
| TF | HRGMv2_4304_12 | HRGMv2_4304_12_9 | 23615 | 24577 | + | GntR |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_10 | 24810 | 26507 | + | 1.B.52.2.2 |
| NULL(UNKNOWN) | HRGMv2_4304_12 | HRGMv2_4304_12_11 | 26614 | 26778 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_12 | 26945 | 28105 | - | 3.A.1.2.5 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_13 | 28107 | 29651 | - | 3.A.1.2.5 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_14 | 29863 | 31056 | - | 3.A.1.2.5 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_15 | 31227 | 32264 | - | 3.A.1.2.4 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_16 | 32270 | 33769 | - | 8.A.59.2.1 |
| STP | HRGMv2_4304_12 | HRGMv2_4304_12_17 | 33753 | 34799 | - | Peripla_BP_1 |
| STP | HRGMv2_4304_12 | HRGMv2_4304_12_18 | 34851 | 35258 | - | Rhodanese |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_19 | 35408 | 40672 | - | CBM6 | CBM6 | GH2 |
| pfam | HRGMv2_4304_12 | HRGMv2_4304_12_20 | 40708 | 44427 | - | fn3 | Flg_new_2 | Flg_new_2 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_21 | 44551 | 50571 | - | CBM6 | CBM6 | CBM6 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_22 | 50687 | 53974 | - | GH43_35 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_23 | 53993 | 57214 | - | GH43_35 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_24 | 57255 | 60527 | - | GH43_35 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_25 | 60584 | 62692 | - | GH10 |
| pfam | HRGMv2_4304_12 | HRGMv2_4304_12_26 | 62803 | 65043 | - | Big_2 | Big_2 | Big_2 | Flg_new | Flg_new | Laminin_G_3 | Flg_new_2 | Flg_new_2 | Flg_new_2 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_27 | 65286 | 67784 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_28 | 67833 | 70274 | - | CBM22 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_29 | 70300 | 74904 | - | GH3 |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_30 | 74929 | 77763 | - | CBM91 | GH43_10 |
| NULL(UNKNOWN) | HRGMv2_4304_12 | HRGMv2_4304_12_31 | 77913 | 78932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4304_12 | HRGMv2_4304_12_32 | 78998 | 80653 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4304_12 | HRGMv2_4304_12_33 | 81406 | 83337 | - | GH127 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_34 | 83350 | 84183 | - | 3.A.1.1.41 |
| TC | HRGMv2_4304_12 | HRGMv2_4304_12_35 | 84185 | 85090 | - | 3.A.1.1.19 |
Gene ID: HRGMv2_4304_12_3
Type: TC
Location: 2870 - 4606 (-)
Type: TC
Location: 2870 - 4606 (-)
Gene ID: HRGMv2_4304_12_4
Type: TF
Location: 4590 - 6179 (-)
Type: TF
Location: 4590 - 6179 (-)
Gene ID: HRGMv2_4304_12_5
Type: CAZyme
Location: 6271 - 12744 (-)
Type: CAZyme
Location: 6271 - 12744 (-)
Gene ID: HRGMv2_4304_12_6
Type: CAZyme
Location: 12869 - 17638 (-)
Type: CAZyme
Location: 12869 - 17638 (-)
Gene ID: HRGMv2_4304_12_7
Type: TC
Location: 17881 - 19731 (-)
Type: TC
Location: 17881 - 19731 (-)
Gene ID: HRGMv2_4304_12_8
Type: STP
Location: 20103 - 22889 (-)
Type: STP
Location: 20103 - 22889 (-)
Gene ID: HRGMv2_4304_12_9
Type: TF
Location: 23615 - 24577 (+)
Type: TF
Location: 23615 - 24577 (+)
Gene ID: HRGMv2_4304_12_10
Type: TC
Location: 24810 - 26507 (+)
Type: TC
Location: 24810 - 26507 (+)
Gene ID: HRGMv2_4304_12_11
Type:
Location: 26614 - 26778 (+)
Type:
Location: 26614 - 26778 (+)
Gene ID: HRGMv2_4304_12_12
Type: TC
Location: 26945 - 28105 (-)
Type: TC
Location: 26945 - 28105 (-)
Gene ID: HRGMv2_4304_12_13
Type: TC
Location: 28107 - 29651 (-)
Type: TC
Location: 28107 - 29651 (-)
Gene ID: HRGMv2_4304_12_14
Type: TC
Location: 29863 - 31056 (-)
Type: TC
Location: 29863 - 31056 (-)
Gene ID: HRGMv2_4304_12_15
Type: TC
Location: 31227 - 32264 (-)
Type: TC
Location: 31227 - 32264 (-)
Gene ID: HRGMv2_4304_12_16
Type: TC
Location: 32270 - 33769 (-)
Type: TC
Location: 32270 - 33769 (-)
Gene ID: HRGMv2_4304_12_17
Type: STP
Location: 33753 - 34799 (-)
Type: STP
Location: 33753 - 34799 (-)
Gene ID: HRGMv2_4304_12_18
Type: STP
Location: 34851 - 35258 (-)
Type: STP
Location: 34851 - 35258 (-)
Gene ID: HRGMv2_4304_12_19
Type: CAZyme
Location: 35408 - 40672 (-)
Type: CAZyme
Location: 35408 - 40672 (-)
Gene ID: HRGMv2_4304_12_20
Type: pfam
Location: 40708 - 44427 (-)
Type: pfam
Location: 40708 - 44427 (-)
Gene ID: HRGMv2_4304_12_21
Type: CAZyme
Location: 44551 - 50571 (-)
Type: CAZyme
Location: 44551 - 50571 (-)
Gene ID: HRGMv2_4304_12_22
Type: CAZyme
Location: 50687 - 53974 (-)
Type: CAZyme
Location: 50687 - 53974 (-)
Gene ID: HRGMv2_4304_12_23
Type: CAZyme
Location: 53993 - 57214 (-)
Type: CAZyme
Location: 53993 - 57214 (-)
Gene ID: HRGMv2_4304_12_24
Type: CAZyme
Location: 57255 - 60527 (-)
Type: CAZyme
Location: 57255 - 60527 (-)
Gene ID: HRGMv2_4304_12_25
Type: CAZyme
Location: 60584 - 62692 (-)
Type: CAZyme
Location: 60584 - 62692 (-)
Gene ID: HRGMv2_4304_12_26
Type: pfam
Location: 62803 - 65043 (-)
Type: pfam
Location: 62803 - 65043 (-)
Gene ID: HRGMv2_4304_12_27
Type: CAZyme
Location: 65286 - 67784 (+)
Type: CAZyme
Location: 65286 - 67784 (+)
Gene ID: HRGMv2_4304_12_28
Type: CAZyme
Location: 67833 - 70274 (-)
Type: CAZyme
Location: 67833 - 70274 (-)
Gene ID: HRGMv2_4304_12_29
Type: CAZyme
Location: 70300 - 74904 (-)
Type: CAZyme
Location: 70300 - 74904 (-)
Gene ID: HRGMv2_4304_12_30
Type: CAZyme
Location: 74929 - 77763 (-)
Type: CAZyme
Location: 74929 - 77763 (-)
Gene ID: HRGMv2_4304_12_31
Type:
Location: 77913 - 78932 (-)
Type:
Location: 77913 - 78932 (-)
Gene ID: HRGMv2_4304_12_32
Type: TF
Location: 78998 - 80653 (-)
Type: TF
Location: 78998 - 80653 (-)
Gene ID: HRGMv2_4304_12_33
Type: CAZyme
Location: 81406 - 83337 (-)
Type: CAZyme
Location: 81406 - 83337 (-)
Gene ID: HRGMv2_4304_12_34
Type: TC
Location: 83350 - 84183 (-)
Type: TC
Location: 83350 - 84183 (-)
Gene ID: HRGMv2_4304_12_35
Type: TC
Location: 84185 - 85090 (-)
Type: TC
Location: 84185 - 85090 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominisplanchenecus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.