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Cluster: HRGMv2_4304_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4304_11 HRGMv2_4304_11_1 39 3161 - GH127
TC HRGMv2_4304_11 HRGMv2_4304_11_2 3348 4397 - 3.A.1.2.14
TC HRGMv2_4304_11 HRGMv2_4304_11_3 4399 5481 - 3.A.1.2.14
TC HRGMv2_4304_11 HRGMv2_4304_11_4 5481 7046 - 3.A.1.2.23
TC HRGMv2_4304_11 HRGMv2_4304_11_5 7120 8223 - 3.A.1.2.1
TF HRGMv2_4304_11 HRGMv2_4304_11_6 8630 9715 + GntR
TF HRGMv2_4304_11 HRGMv2_4304_11_7 9712 11325 - HTH_AraC
TC HRGMv2_4304_11 HRGMv2_4304_11_8 11344 12369 - 3.A.1.2.14
TC HRGMv2_4304_11 HRGMv2_4304_11_9 12375 13955 - 8.A.59.2.1
TF HRGMv2_4304_11 HRGMv2_4304_11_10 13915 15006 - LacI
CAZyme HRGMv2_4304_11 HRGMv2_4304_11_11 15204 19841 - GH43_22
Gene ID: HRGMv2_4304_11_1
Type: CAZyme
Location: 39 - 3161 (-)
Gene ID: HRGMv2_4304_11_2
Type: TC
Location: 3348 - 4397 (-)
Gene ID: HRGMv2_4304_11_3
Type: TC
Location: 4399 - 5481 (-)
Gene ID: HRGMv2_4304_11_4
Type: TC
Location: 5481 - 7046 (-)
Gene ID: HRGMv2_4304_11_5
Type: TC
Location: 7120 - 8223 (-)
Gene ID: HRGMv2_4304_11_6
Type: TF
Location: 8630 - 9715 (+)
Gene ID: HRGMv2_4304_11_7
Type: TF
Location: 9712 - 11325 (-)
Gene ID: HRGMv2_4304_11_8
Type: TC
Location: 11344 - 12369 (-)
Gene ID: HRGMv2_4304_11_9
Type: TC
Location: 12375 - 13955 (-)
Gene ID: HRGMv2_4304_11_10
Type: TF
Location: 13915 - 15006 (-)
Gene ID: HRGMv2_4304_11_11
Type: CAZyme
Location: 15204 - 19841 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4304_11_5 vegetarian > omnivore 1.10399 0.00566

🧭 Explore Read Mapping of CGC

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