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Cluster: HRGMv2_4246_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4246_29 HRGMv2_4246_29_1 144 1958 + 3.A.25.2.1
STP HRGMv2_4246_29 HRGMv2_4246_29_2 1973 2509 - TetR_N
CAZyme HRGMv2_4246_29 HRGMv2_4246_29_3 2560 3384 + GT8
TF HRGMv2_4246_29 HRGMv2_4246_29_4 3466 4500 + LacI
TC HRGMv2_4246_29 HRGMv2_4246_29_5 4710 5969 + 3.A.1.1.28
TC HRGMv2_4246_29 HRGMv2_4246_29_6 5971 6834 + 3.A.1.1.28
TC HRGMv2_4246_29 HRGMv2_4246_29_7 6831 7679 + 3.A.1.1.45
CAZyme HRGMv2_4246_29 HRGMv2_4246_29_8 7697 9364 + GH13_31
CAZyme HRGMv2_4246_29 HRGMv2_4246_29_9 9390 11069 + GH13_31
TC HRGMv2_4246_29 HRGMv2_4246_29_10 11274 12602 + 2.A.66.1.33
Gene ID: HRGMv2_4246_29_1
Type: TC
Location: 144 - 1958 (+)
Gene ID: HRGMv2_4246_29_2
Type: STP
Location: 1973 - 2509 (-)
Gene ID: HRGMv2_4246_29_3
Type: CAZyme
Location: 2560 - 3384 (+)
Gene ID: HRGMv2_4246_29_4
Type: TF
Location: 3466 - 4500 (+)
Gene ID: HRGMv2_4246_29_5
Type: TC
Location: 4710 - 5969 (+)
Gene ID: HRGMv2_4246_29_6
Type: TC
Location: 5971 - 6834 (+)
Gene ID: HRGMv2_4246_29_7
Type: TC
Location: 6831 - 7679 (+)
Gene ID: HRGMv2_4246_29_8
Type: CAZyme
Location: 7697 - 9364 (+)
Gene ID: HRGMv2_4246_29_9
Type: CAZyme
Location: 9390 - 11069 (+)
Gene ID: HRGMv2_4246_29_10
Type: TC
Location: 11274 - 12602 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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