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Cluster: HRGMv2_4245_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_139 166559 168115 + CBM50
pfam HRGMv2_4245_1 HRGMv2_4245_1_140 168422 169747 + Peripla_BP_4 | Peripla_BP_7
TC HRGMv2_4245_1 HRGMv2_4245_1_141 169871 171379 + 3.A.1.2.3
TC HRGMv2_4245_1 HRGMv2_4245_1_142 171479 173128 + 3.A.1.2.3
TF HRGMv2_4245_1 HRGMv2_4245_1_143 173345 174955 + HTH_AraC | HTH_AraC
TC HRGMv2_4245_1 HRGMv2_4245_1_144 174945 176798 + 9.B.33.1.1
STP HRGMv2_4245_1 HRGMv2_4245_1_145 176788 177759 + Peripla_BP_1
TC HRGMv2_4245_1 HRGMv2_4245_1_146 177829 178869 + 3.A.1.2.3
pfam HRGMv2_4245_1 HRGMv2_4245_1_147 179366 180307 + A_deaminase
TC HRGMv2_4245_1 HRGMv2_4245_1_148 180434 181081 - 1.C.113.1.2
STP HRGMv2_4245_1 HRGMv2_4245_1_149 181300 182055 + Nitroreductase
pfam HRGMv2_4245_1 HRGMv2_4245_1_150 182055 182744 + PseudoU_synth_2
TC HRGMv2_4245_1 HRGMv2_4245_1_151 182835 183899 + 2.A.86.1.9
Gene ID: HRGMv2_4245_1_139
Type: CAZyme
Location: 166559 - 168115 (+)
Gene ID: HRGMv2_4245_1_140
Type: pfam
Location: 168422 - 169747 (+)
Gene ID: HRGMv2_4245_1_141
Type: TC
Location: 169871 - 171379 (+)
Gene ID: HRGMv2_4245_1_142
Type: TC
Location: 171479 - 173128 (+)
Gene ID: HRGMv2_4245_1_143
Type: TF
Location: 173345 - 174955 (+)
Gene ID: HRGMv2_4245_1_144
Type: TC
Location: 174945 - 176798 (+)
Gene ID: HRGMv2_4245_1_145
Type: STP
Location: 176788 - 177759 (+)
Gene ID: HRGMv2_4245_1_146
Type: TC
Location: 177829 - 178869 (+)
Gene ID: HRGMv2_4245_1_147
Type: pfam
Location: 179366 - 180307 (+)
Gene ID: HRGMv2_4245_1_148
Type: TC
Location: 180434 - 181081 (-)
Gene ID: HRGMv2_4245_1_149
Type: STP
Location: 181300 - 182055 (+)
Gene ID: HRGMv2_4245_1_150
Type: pfam
Location: 182055 - 182744 (+)
Gene ID: HRGMv2_4245_1_151
Type: TC
Location: 182835 - 183899 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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