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Cluster: HRGMv2_4245_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_39 HRGMv2_4245_39_2 384 2243 - GH2
CAZyme HRGMv2_4245_39 HRGMv2_4245_39_3 2374 4110 - CE12
CAZyme HRGMv2_4245_39 HRGMv2_4245_39_4 4171 9048 - PL11_1
STP HRGMv2_4245_39 HRGMv2_4245_39_5 9167 10825 - SBP_bac_1
TC HRGMv2_4245_39 HRGMv2_4245_39_6 10905 11798 - 3.A.1.1.29
TC HRGMv2_4245_39 HRGMv2_4245_39_7 11811 12752 - 3.A.1.1.10
TF HRGMv2_4245_39 HRGMv2_4245_39_8 13059 13958 - HTH_AraC | HTH_AraC
TF HRGMv2_4245_39 HRGMv2_4245_39_9 14261 15109 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4245_39 HRGMv2_4245_39_10 15205 17220 + GH115
TC HRGMv2_4245_39 HRGMv2_4245_39_11 17362 19254 - 3.A.1.135.5
TC HRGMv2_4245_39 HRGMv2_4245_39_12 19257 21020 - 3.A.1.135.5
Gene ID: HRGMv2_4245_39_2
Type: CAZyme
Location: 384 - 2243 (-)
Gene ID: HRGMv2_4245_39_3
Type: CAZyme
Location: 2374 - 4110 (-)
Gene ID: HRGMv2_4245_39_4
Type: CAZyme
Location: 4171 - 9048 (-)
Gene ID: HRGMv2_4245_39_5
Type: STP
Location: 9167 - 10825 (-)
Gene ID: HRGMv2_4245_39_6
Type: TC
Location: 10905 - 11798 (-)
Gene ID: HRGMv2_4245_39_7
Type: TC
Location: 11811 - 12752 (-)
Gene ID: HRGMv2_4245_39_8
Type: TF
Location: 13059 - 13958 (-)
Gene ID: HRGMv2_4245_39_9
Type: TF
Location: 14261 - 15109 (+)
Gene ID: HRGMv2_4245_39_10
Type: CAZyme
Location: 15205 - 17220 (+)
Gene ID: HRGMv2_4245_39_11
Type: TC
Location: 17362 - 19254 (-)
Gene ID: HRGMv2_4245_39_12
Type: TC
Location: 19257 - 21020 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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