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Cluster: HRGMv2_4245_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_36 HRGMv2_4245_36_10 9535 12036 - GH31_2
TF HRGMv2_4245_36 HRGMv2_4245_36_11 12224 13066 + HTH_AraC | HTH_AraC
TC HRGMv2_4245_36 HRGMv2_4245_36_12 13107 14465 + 2.A.66.1.33
pfam HRGMv2_4245_36 HRGMv2_4245_36_13 14556 14954 - ATP-synt_DE | ATP-synt_DE_N
TC HRGMv2_4245_36 HRGMv2_4245_36_14 14966 16360 - 3.A.2.1.5
TC HRGMv2_4245_36 HRGMv2_4245_36_15 16525 17379 - 3.A.2.1.5
TC HRGMv2_4245_36 HRGMv2_4245_36_16 17396 18898 - 3.A.2.1.5
TC HRGMv2_4245_36 HRGMv2_4245_36_17 18950 19498 - 3.A.2.1.5
pfam HRGMv2_4245_36 HRGMv2_4245_36_18 19486 20001 - ATP-synt_B | Mt_ATP-synt_B
TC HRGMv2_4245_36 HRGMv2_4245_36_19 20049 20306 - 3.A.2.1.5
TC HRGMv2_4245_36 HRGMv2_4245_36_20 20337 21038 - 3.A.2.1.5
Gene ID: HRGMv2_4245_36_10
Type: CAZyme
Location: 9535 - 12036 (-)
Gene ID: HRGMv2_4245_36_11
Type: TF
Location: 12224 - 13066 (+)
Gene ID: HRGMv2_4245_36_12
Type: TC
Location: 13107 - 14465 (+)
Gene ID: HRGMv2_4245_36_13
Type: pfam
Location: 14556 - 14954 (-)
Gene ID: HRGMv2_4245_36_14
Type: TC
Location: 14966 - 16360 (-)
Gene ID: HRGMv2_4245_36_15
Type: TC
Location: 16525 - 17379 (-)
Gene ID: HRGMv2_4245_36_16
Type: TC
Location: 17396 - 18898 (-)
Gene ID: HRGMv2_4245_36_17
Type: TC
Location: 18950 - 19498 (-)
Gene ID: HRGMv2_4245_36_18
Type: pfam
Location: 19486 - 20001 (-)
Gene ID: HRGMv2_4245_36_19
Type: TC
Location: 20049 - 20306 (-)
Gene ID: HRGMv2_4245_36_20
Type: TC
Location: 20337 - 21038 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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