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Cluster: HRGMv2_4245_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_30 HRGMv2_4245_30_6 4529 6211 + GH13_31
TF HRGMv2_4245_30 HRGMv2_4245_30_7 6259 7146 - HTH_AraC | HTH_AraC
TC HRGMv2_4245_30 HRGMv2_4245_30_8 7439 8764 + 3.A.1.1.45
TC HRGMv2_4245_30 HRGMv2_4245_30_9 8845 9687 + 3.A.1.1.45
TC HRGMv2_4245_30 HRGMv2_4245_30_10 9687 10526 + 3.A.1.1.45
TF HRGMv2_4245_30 HRGMv2_4245_30_11 10598 11629 + LacI
NULL(UNKNOWN) HRGMv2_4245_30 HRGMv2_4245_30_12 11695 11940 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4245_30 HRGMv2_4245_30_13 12073 13980 + 3.A.1.121.4
pfam HRGMv2_4245_30 HRGMv2_4245_30_14 13986 14507 - CarD_TRCF_RID
TC HRGMv2_4245_30 HRGMv2_4245_30_15 14763 15536 + 3.A.1.17.8
TC HRGMv2_4245_30 HRGMv2_4245_30_16 15529 16332 + 3.A.1.17.4
STP HRGMv2_4245_30 HRGMv2_4245_30_17 16406 17539 - Diacid_rec
STP HRGMv2_4245_30 HRGMv2_4245_30_18 17855 19324 + SBP_bac_1
TC HRGMv2_4245_30 HRGMv2_4245_30_19 19413 20330 + 3.A.1.1.28
TC HRGMv2_4245_30 HRGMv2_4245_30_20 20342 21172 + 3.A.1.1.36
Gene ID: HRGMv2_4245_30_6
Type: CAZyme
Location: 4529 - 6211 (+)
Gene ID: HRGMv2_4245_30_7
Type: TF
Location: 6259 - 7146 (-)
Gene ID: HRGMv2_4245_30_8
Type: TC
Location: 7439 - 8764 (+)
Gene ID: HRGMv2_4245_30_9
Type: TC
Location: 8845 - 9687 (+)
Gene ID: HRGMv2_4245_30_10
Type: TC
Location: 9687 - 10526 (+)
Gene ID: HRGMv2_4245_30_11
Type: TF
Location: 10598 - 11629 (+)
Gene ID: HRGMv2_4245_30_12
Type:
Location: 11695 - 11940 (-)
Gene ID: HRGMv2_4245_30_13
Type: TC
Location: 12073 - 13980 (+)
Gene ID: HRGMv2_4245_30_14
Type: pfam
Location: 13986 - 14507 (-)
Gene ID: HRGMv2_4245_30_15
Type: TC
Location: 14763 - 15536 (+)
Gene ID: HRGMv2_4245_30_16
Type: TC
Location: 15529 - 16332 (+)
Gene ID: HRGMv2_4245_30_17
Type: STP
Location: 16406 - 17539 (-)
Gene ID: HRGMv2_4245_30_18
Type: STP
Location: 17855 - 19324 (+)
Gene ID: HRGMv2_4245_30_19
Type: TC
Location: 19413 - 20330 (+)
Gene ID: HRGMv2_4245_30_20
Type: TC
Location: 20342 - 21172 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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