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Cluster: HRGMv2_4245_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_16 HRGMv2_4245_16_2 1505 3091 + 4.A.6.1.13
TC HRGMv2_4245_16 HRGMv2_4245_16_3 3573 4235 + 3.A.2.1.5
TC HRGMv2_4245_16 HRGMv2_4245_16_4 4284 4502 + 3.A.2.1.5
pfam HRGMv2_4245_16 HRGMv2_4245_16_5 4558 5058 + ATP-synt_B
pfam HRGMv2_4245_16 HRGMv2_4245_16_6 5039 5542 + OSCP
TC HRGMv2_4245_16 HRGMv2_4245_16_7 5548 7056 + 3.A.2.1.5
TC HRGMv2_4245_16 HRGMv2_4245_16_8 7060 7953 + 3.A.2.1.5
TC HRGMv2_4245_16 HRGMv2_4245_16_9 7993 9399 + 3.A.2.1.5
pfam HRGMv2_4245_16 HRGMv2_4245_16_10 9412 9825 + ATP-synt_DE | ATP-synt_DE_N
CAZyme HRGMv2_4245_16 HRGMv2_4245_16_11 10043 11452 + GH1
TC HRGMv2_4245_16 HRGMv2_4245_16_12 11517 12323 - 2.A.5.5.2
peptidase HRGMv2_4245_16 HRGMv2_4245_16_13 12485 14032 + C40.UNW
TC HRGMv2_4245_16 HRGMv2_4245_16_14 14069 15430 + 2.A.66.1.33
STP HRGMv2_4245_16 HRGMv2_4245_16_15 15530 17923 - HATPase_c | HisKA
TF HRGMv2_4245_16 HRGMv2_4245_16_16 17933 18628 - Trans_reg_C
CAZyme HRGMv2_4245_16 HRGMv2_4245_16_17 18752 19891 + GH18
Gene ID: HRGMv2_4245_16_2
Type: TC
Location: 1505 - 3091 (+)
Gene ID: HRGMv2_4245_16_3
Type: TC
Location: 3573 - 4235 (+)
Gene ID: HRGMv2_4245_16_4
Type: TC
Location: 4284 - 4502 (+)
Gene ID: HRGMv2_4245_16_5
Type: pfam
Location: 4558 - 5058 (+)
Gene ID: HRGMv2_4245_16_6
Type: pfam
Location: 5039 - 5542 (+)
Gene ID: HRGMv2_4245_16_7
Type: TC
Location: 5548 - 7056 (+)
Gene ID: HRGMv2_4245_16_8
Type: TC
Location: 7060 - 7953 (+)
Gene ID: HRGMv2_4245_16_9
Type: TC
Location: 7993 - 9399 (+)
Gene ID: HRGMv2_4245_16_10
Type: pfam
Location: 9412 - 9825 (+)
Gene ID: HRGMv2_4245_16_11
Type: CAZyme
Location: 10043 - 11452 (+)
Gene ID: HRGMv2_4245_16_12
Type: TC
Location: 11517 - 12323 (-)
Gene ID: HRGMv2_4245_16_13
Type: peptidase
Location: 12485 - 14032 (+)
Gene ID: HRGMv2_4245_16_14
Type: TC
Location: 14069 - 15430 (+)
Gene ID: HRGMv2_4245_16_15
Type: STP
Location: 15530 - 17923 (-)
Gene ID: HRGMv2_4245_16_16
Type: TF
Location: 17933 - 18628 (-)
Gene ID: HRGMv2_4245_16_17
Type: CAZyme
Location: 18752 - 19891 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4245_16_4 vegan > omnivore 1.14396 0.00863

🧭 Explore Read Mapping of CGC

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