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Cluster: HRGMv2_4245_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_12 HRGMv2_4245_12_50 59330 59890 + 2.A.107.1.2
STP HRGMv2_4245_12 HRGMv2_4245_12_51 59990 61537 - NIR_SIR | NIR_SIR_ferr
CAZyme HRGMv2_4245_12 HRGMv2_4245_12_52 61628 62719 - CE19
STP HRGMv2_4245_12 HRGMv2_4245_12_53 62853 64451 - SBP_bac_1
TC HRGMv2_4245_12 HRGMv2_4245_12_54 64491 65405 - 3.A.1.1.29
TC HRGMv2_4245_12 HRGMv2_4245_12_55 65428 66393 - 3.A.1.1.10
TF HRGMv2_4245_12 HRGMv2_4245_12_56 66547 68700 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4245_12 HRGMv2_4245_12_57 69063 73271 - GH28
pfam HRGMv2_4245_12 HRGMv2_4245_12_58 73781 74614 + Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3
TC HRGMv2_4245_12 HRGMv2_4245_12_59 74711 75406 - 9.B.143.2.2
Gene ID: HRGMv2_4245_12_50
Type: TC
Location: 59330 - 59890 (+)
Gene ID: HRGMv2_4245_12_51
Type: STP
Location: 59990 - 61537 (-)
Gene ID: HRGMv2_4245_12_52
Type: CAZyme
Location: 61628 - 62719 (-)
Gene ID: HRGMv2_4245_12_53
Type: STP
Location: 62853 - 64451 (-)
Gene ID: HRGMv2_4245_12_54
Type: TC
Location: 64491 - 65405 (-)
Gene ID: HRGMv2_4245_12_55
Type: TC
Location: 65428 - 66393 (-)
Gene ID: HRGMv2_4245_12_56
Type: TF
Location: 66547 - 68700 (-)
Gene ID: HRGMv2_4245_12_57
Type: CAZyme
Location: 69063 - 73271 (-)
Gene ID: HRGMv2_4245_12_58
Type: pfam
Location: 73781 - 74614 (+)
Gene ID: HRGMv2_4245_12_59
Type: TC
Location: 74711 - 75406 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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