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Cluster: HRGMv2_4245_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_10 HRGMv2_4245_10_48 43331 45088 - 3.A.1.106.2
TC HRGMv2_4245_10 HRGMv2_4245_10_49 45284 46108 + 1.A.16.1.3
pfam HRGMv2_4245_10 HRGMv2_4245_10_50 46167 47021 - AP_endonuc_2
CAZyme HRGMv2_4245_10 HRGMv2_4245_10_51 47060 48214 - GH177
TF HRGMv2_4245_10 HRGMv2_4245_10_52 48381 49196 + HTH_AraC | HTH_AraC
TC HRGMv2_4245_10 HRGMv2_4245_10_53 49253 51175 - 3.A.1.11.7
TC HRGMv2_4245_10 HRGMv2_4245_10_54 51175 51996 - 3.A.1.11.1
TC HRGMv2_4245_10 HRGMv2_4245_10_55 51989 53065 - 3.A.1.11.8
Gene ID: HRGMv2_4245_10_48
Type: TC
Location: 43331 - 45088 (-)
Gene ID: HRGMv2_4245_10_49
Type: TC
Location: 45284 - 46108 (+)
Gene ID: HRGMv2_4245_10_50
Type: pfam
Location: 46167 - 47021 (-)
Gene ID: HRGMv2_4245_10_51
Type: CAZyme
Location: 47060 - 48214 (-)
Gene ID: HRGMv2_4245_10_52
Type: TF
Location: 48381 - 49196 (+)
Gene ID: HRGMv2_4245_10_53
Type: TC
Location: 49253 - 51175 (-)
Gene ID: HRGMv2_4245_10_54
Type: TC
Location: 51175 - 51996 (-)
Gene ID: HRGMv2_4245_10_55
Type: TC
Location: 51989 - 53065 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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