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Cluster: HRGMv2_4245_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_9 HRGMv2_4245_9_61 75150 77102 + 4.A.1.2.9
CAZyme HRGMv2_4245_9 HRGMv2_4245_9_62 77143 78600 + GH32
pfam HRGMv2_4245_9 HRGMv2_4245_9_63 78543 79514 + KduI
STP HRGMv2_4245_9 HRGMv2_4245_9_64 79889 81196 + SBP_bac_1
TC HRGMv2_4245_9 HRGMv2_4245_9_65 81270 82184 + 3.A.1.1.25
TC HRGMv2_4245_9 HRGMv2_4245_9_66 82174 83019 + 3.A.1.1.25
TC HRGMv2_4245_9 HRGMv2_4245_9_67 83275 85113 + 8.A.59.2.1
STP HRGMv2_4245_9 HRGMv2_4245_9_68 85120 85788 + Response_reg
TF HRGMv2_4245_9 HRGMv2_4245_9_69 85790 86716 + HTH_AraC | HTH_AraC
TC HRGMv2_4245_9 HRGMv2_4245_9_70 86967 87854 + 3.A.1.1.19
TC HRGMv2_4245_9 HRGMv2_4245_9_71 87855 88697 + 3.A.1.1.33
STP HRGMv2_4245_9 HRGMv2_4245_9_72 88737 90101 + SBP_bac_1
CAZyme HRGMv2_4245_9 HRGMv2_4245_9_73 90114 91334 + PL22 | PL22_2
Gene ID: HRGMv2_4245_9_61
Type: TC
Location: 75150 - 77102 (+)
Gene ID: HRGMv2_4245_9_62
Type: CAZyme
Location: 77143 - 78600 (+)
Gene ID: HRGMv2_4245_9_63
Type: pfam
Location: 78543 - 79514 (+)
Gene ID: HRGMv2_4245_9_64
Type: STP
Location: 79889 - 81196 (+)
Gene ID: HRGMv2_4245_9_65
Type: TC
Location: 81270 - 82184 (+)
Gene ID: HRGMv2_4245_9_66
Type: TC
Location: 82174 - 83019 (+)
Gene ID: HRGMv2_4245_9_67
Type: TC
Location: 83275 - 85113 (+)
Gene ID: HRGMv2_4245_9_68
Type: STP
Location: 85120 - 85788 (+)
Gene ID: HRGMv2_4245_9_69
Type: TF
Location: 85790 - 86716 (+)
Gene ID: HRGMv2_4245_9_70
Type: TC
Location: 86967 - 87854 (+)
Gene ID: HRGMv2_4245_9_71
Type: TC
Location: 87855 - 88697 (+)
Gene ID: HRGMv2_4245_9_72
Type: STP
Location: 88737 - 90101 (+)
Gene ID: HRGMv2_4245_9_73
Type: CAZyme
Location: 90114 - 91334 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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