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Cluster: HRGMv2_4245_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_53 63205 66471 + GH2
TC HRGMv2_4245_1 HRGMv2_4245_1_54 66696 67658 + 3.A.1.1.10
TC HRGMv2_4245_1 HRGMv2_4245_1_55 67681 68583 + 3.A.1.1.10
pfam HRGMv2_4245_1 HRGMv2_4245_1_56 68639 70207 + SBP_bac_8
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_57 70284 72908 + PL26
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_58 72925 76095 + CE12 | PL11
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_59 76099 77148 + GH105
Gene ID: HRGMv2_4245_1_53
Type: CAZyme
Location: 63205 - 66471 (+)
Gene ID: HRGMv2_4245_1_54
Type: TC
Location: 66696 - 67658 (+)
Gene ID: HRGMv2_4245_1_55
Type: TC
Location: 67681 - 68583 (+)
Gene ID: HRGMv2_4245_1_56
Type: pfam
Location: 68639 - 70207 (+)
Gene ID: HRGMv2_4245_1_57
Type: CAZyme
Location: 70284 - 72908 (+)
Gene ID: HRGMv2_4245_1_58
Type: CAZyme
Location: 72925 - 76095 (+)
Gene ID: HRGMv2_4245_1_59
Type: CAZyme
Location: 76099 - 77148 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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