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Cluster: HRGMv2_4245_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_6 HRGMv2_4245_6_31 41896 43026 - 2.A.45.2.6
TF HRGMv2_4245_6 HRGMv2_4245_6_32 43053 44681 - HTH_AraC | HTH_AraC
TC HRGMv2_4245_6 HRGMv2_4245_6_33 44721 46589 - 8.A.59.2.1
STP HRGMv2_4245_6 HRGMv2_4245_6_34 46919 48277 + SBP_bac_1
TC HRGMv2_4245_6 HRGMv2_4245_6_35 48415 49470 + 3.A.1.1.20
TC HRGMv2_4245_6 HRGMv2_4245_6_36 49488 50324 + 3.A.1.1.11
CAZyme HRGMv2_4245_6 HRGMv2_4245_6_37 50402 51583 + GH88
Gene ID: HRGMv2_4245_6_31
Type: TC
Location: 41896 - 43026 (-)
Gene ID: HRGMv2_4245_6_32
Type: TF
Location: 43053 - 44681 (-)
Gene ID: HRGMv2_4245_6_33
Type: TC
Location: 44721 - 46589 (-)
Gene ID: HRGMv2_4245_6_34
Type: STP
Location: 46919 - 48277 (+)
Gene ID: HRGMv2_4245_6_35
Type: TC
Location: 48415 - 49470 (+)
Gene ID: HRGMv2_4245_6_36
Type: TC
Location: 49488 - 50324 (+)
Gene ID: HRGMv2_4245_6_37
Type: CAZyme
Location: 50402 - 51583 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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