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Cluster: HRGMv2_4245_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_3 HRGMv2_4245_3_1 124 1887 - GH35
CAZyme HRGMv2_4245_3 HRGMv2_4245_3_2 1912 3036 - GH88
TC HRGMv2_4245_3 HRGMv2_4245_3_3 3122 3598 - 4.A.6.1.13
TC HRGMv2_4245_3 HRGMv2_4245_3_4 3662 4462 - 4.A.6.1.13
TC HRGMv2_4245_3 HRGMv2_4245_3_5 4455 5240 - 4.A.6.1.13
TC HRGMv2_4245_3 HRGMv2_4245_3_6 5276 5707 - 4.A.6.1.8
TF HRGMv2_4245_3 HRGMv2_4245_3_7 5737 6441 - GntR
STP HRGMv2_4245_3 HRGMv2_4245_3_8 7047 7697 + TetR_N
TC HRGMv2_4245_3 HRGMv2_4245_3_9 7808 9577 + 3.A.1.21.1
TC HRGMv2_4245_3 HRGMv2_4245_3_10 9582 11315 + 3.A.1.21.1
TC HRGMv2_4245_3 HRGMv2_4245_3_11 11877 12437 - 3.A.1.29.1
pfam HRGMv2_4245_3 HRGMv2_4245_3_12 12514 13362 - SAM_HAT_N | SAM_HAT_C
TC HRGMv2_4245_3 HRGMv2_4245_3_13 13391 14224 - 3.A.1.29.1
TC HRGMv2_4245_3 HRGMv2_4245_3_14 14205 15938 - 3.A.1.29.1
TF HRGMv2_4245_3 HRGMv2_4245_3_15 15953 17479 - GntR
TC HRGMv2_4245_3 HRGMv2_4245_3_16 17854 18879 + 2.A.56.1.5
TC HRGMv2_4245_3 HRGMv2_4245_3_17 18892 19416 + 2.A.56.1.5
TC HRGMv2_4245_3 HRGMv2_4245_3_18 19420 20721 + 2.A.56.1.5
Gene ID: HRGMv2_4245_3_1
Type: CAZyme
Location: 124 - 1887 (-)
Gene ID: HRGMv2_4245_3_2
Type: CAZyme
Location: 1912 - 3036 (-)
Gene ID: HRGMv2_4245_3_3
Type: TC
Location: 3122 - 3598 (-)
Gene ID: HRGMv2_4245_3_4
Type: TC
Location: 3662 - 4462 (-)
Gene ID: HRGMv2_4245_3_5
Type: TC
Location: 4455 - 5240 (-)
Gene ID: HRGMv2_4245_3_6
Type: TC
Location: 5276 - 5707 (-)
Gene ID: HRGMv2_4245_3_7
Type: TF
Location: 5737 - 6441 (-)
Gene ID: HRGMv2_4245_3_8
Type: STP
Location: 7047 - 7697 (+)
Gene ID: HRGMv2_4245_3_9
Type: TC
Location: 7808 - 9577 (+)
Gene ID: HRGMv2_4245_3_10
Type: TC
Location: 9582 - 11315 (+)
Gene ID: HRGMv2_4245_3_11
Type: TC
Location: 11877 - 12437 (-)
Gene ID: HRGMv2_4245_3_12
Type: pfam
Location: 12514 - 13362 (-)
Gene ID: HRGMv2_4245_3_13
Type: TC
Location: 13391 - 14224 (-)
Gene ID: HRGMv2_4245_3_14
Type: TC
Location: 14205 - 15938 (-)
Gene ID: HRGMv2_4245_3_15
Type: TF
Location: 15953 - 17479 (-)
Gene ID: HRGMv2_4245_3_16
Type: TC
Location: 17854 - 18879 (+)
Gene ID: HRGMv2_4245_3_17
Type: TC
Location: 18892 - 19416 (+)
Gene ID: HRGMv2_4245_3_18
Type: TC
Location: 19420 - 20721 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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