dbCAN Logo

Cluster: HRGMv2_4245_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_1 HRGMv2_4245_1_38 39885 41534 + 8.A.59.2.1
TF HRGMv2_4245_1 HRGMv2_4245_1_39 41527 43119 + HTH_AraC
STP HRGMv2_4245_1 HRGMv2_4245_1_40 43289 44650 + SBP_bac_1
TC HRGMv2_4245_1 HRGMv2_4245_1_41 44737 45645 + 3.A.1.1.11
TC HRGMv2_4245_1 HRGMv2_4245_1_42 45662 46492 + 3.A.1.1.34
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_43 46512 48548 + GH31_4
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_44 48530 50329 + GH2
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_45 50313 51512 + GH88
CAZyme HRGMv2_4245_1 HRGMv2_4245_1_46 51646 53724 + GH42
Gene ID: HRGMv2_4245_1_38
Type: TC
Location: 39885 - 41534 (+)
Gene ID: HRGMv2_4245_1_39
Type: TF
Location: 41527 - 43119 (+)
Gene ID: HRGMv2_4245_1_40
Type: STP
Location: 43289 - 44650 (+)
Gene ID: HRGMv2_4245_1_41
Type: TC
Location: 44737 - 45645 (+)
Gene ID: HRGMv2_4245_1_42
Type: TC
Location: 45662 - 46492 (+)
Gene ID: HRGMv2_4245_1_43
Type: CAZyme
Location: 46512 - 48548 (+)
Gene ID: HRGMv2_4245_1_44
Type: CAZyme
Location: 48530 - 50329 (+)
Gene ID: HRGMv2_4245_1_45
Type: CAZyme
Location: 50313 - 51512 (+)
Gene ID: HRGMv2_4245_1_46
Type: CAZyme
Location: 51646 - 53724 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List