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Cluster: HRGMv2_4243_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4243_1 HRGMv2_4243_1_316 355747 356463 - GT2
pfam HRGMv2_4243_1 HRGMv2_4243_1_317 356615 357058 - RbsD_FucU
TF HRGMv2_4243_1 HRGMv2_4243_1_318 357326 358945 + HTH_AraC
TC HRGMv2_4243_1 HRGMv2_4243_1_319 358942 360768 + 8.A.59.2.1
TC HRGMv2_4243_1 HRGMv2_4243_1_320 360755 361738 + 3.A.1.2.7
TC HRGMv2_4243_1 HRGMv2_4243_1_321 361890 362867 + 3.A.1.2.15
TC HRGMv2_4243_1 HRGMv2_4243_1_322 362888 364399 + 3.A.1.2.20
TC HRGMv2_4243_1 HRGMv2_4243_1_323 364411 365391 + 3.A.1.2.11
Gene ID: HRGMv2_4243_1_316
Type: CAZyme
Location: 355747 - 356463 (-)
Gene ID: HRGMv2_4243_1_317
Type: pfam
Location: 356615 - 357058 (-)
Gene ID: HRGMv2_4243_1_318
Type: TF
Location: 357326 - 358945 (+)
Gene ID: HRGMv2_4243_1_319
Type: TC
Location: 358942 - 360768 (+)
Gene ID: HRGMv2_4243_1_320
Type: TC
Location: 360755 - 361738 (+)
Gene ID: HRGMv2_4243_1_321
Type: TC
Location: 361890 - 362867 (+)
Gene ID: HRGMv2_4243_1_322
Type: TC
Location: 362888 - 364399 (+)
Gene ID: HRGMv2_4243_1_323
Type: TC
Location: 364411 - 365391 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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