dbCAN HGM

Cluster: HRGMv2_4243_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4243_1	HRGMv2_4243_1_258	287502	288788	+	3.A.1.1.4
TC	HRGMv2_4243_1	HRGMv2_4243_1_259	288860	289759	+	3.A.1.1.4
TC	HRGMv2_4243_1	HRGMv2_4243_1_260	289752	290579	+	3.A.1.1.4
CAZyme	HRGMv2_4243_1	HRGMv2_4243_1_261	290658	293738	+	GH2
CAZyme	HRGMv2_4243_1	HRGMv2_4243_1_262	293781	295805	+	GH42
TF	HRGMv2_4243_1	HRGMv2_4243_1_263	295814	296704	-	HTH_AraC \| HTH_AraC
TC	HRGMv2_4243_1	HRGMv2_4243_1_264	297005	298270	+	3.A.1.1.26
TC	HRGMv2_4243_1	HRGMv2_4243_1_265	298305	299198	+	3.A.1.1.25
TC	HRGMv2_4243_1	HRGMv2_4243_1_266	299211	300035	+	3.A.1.1.36
TC	HRGMv2_4243_1	HRGMv2_4243_1_267	300145	300822	+	9.B.28.1.2
CAZyme	HRGMv2_4243_1	HRGMv2_4243_1_268	300853	303051	+	GH36
TF	HRGMv2_4243_1	HRGMv2_4243_1_269	303124	303738	-	0042546
pfam	HRGMv2_4243_1	HRGMv2_4243_1_270	303872	306106	+	UvrD-helicase \| AAA_19 \| UvrD_C \| PcrA_UvrD_tudor
CAZyme	HRGMv2_4243_1	HRGMv2_4243_1_271	306227	308455	+	GH36

Gene ID: HRGMv2_4243_1_258
Type: TC
Location: 287502 - 288788 (+)

Gene ID: HRGMv2_4243_1_259
Type: TC
Location: 288860 - 289759 (+)

Gene ID: HRGMv2_4243_1_260
Type: TC
Location: 289752 - 290579 (+)

Gene ID: HRGMv2_4243_1_261
Type: CAZyme
Location: 290658 - 293738 (+)

Gene ID: HRGMv2_4243_1_262
Type: CAZyme
Location: 293781 - 295805 (+)

Gene ID: HRGMv2_4243_1_263
Type: TF
Location: 295814 - 296704 (-)

Gene ID: HRGMv2_4243_1_264
Type: TC
Location: 297005 - 298270 (+)

Gene ID: HRGMv2_4243_1_265
Type: TC
Location: 298305 - 299198 (+)

Gene ID: HRGMv2_4243_1_266
Type: TC
Location: 299211 - 300035 (+)

Gene ID: HRGMv2_4243_1_267
Type: TC
Location: 300145 - 300822 (+)

Gene ID: HRGMv2_4243_1_268
Type: CAZyme
Location: 300853 - 303051 (+)

Gene ID: HRGMv2_4243_1_269
Type: TF
Location: 303124 - 303738 (-)

Gene ID: HRGMv2_4243_1_270
Type: pfam
Location: 303872 - 306106 (+)

Gene ID: HRGMv2_4243_1_271
Type: CAZyme
Location: 306227 - 308455 (+)

Taxonomic Lineage

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Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4243_1_264	vegan > omnivore	1.73218	0.00787
HRGMv2_4243_1_265	vegan > omnivore	1.33729	0.00787
HRGMv2_4243_1_266	vegan > omnivore	1.34434	0.00787
HRGMv2_4243_1_269	vegan > omnivore	1.22200	0.00787