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Cluster: HRGMv2_4243_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4243_18 HRGMv2_4243_18_25 26860 28344 - 9.A.11.1.2
TF HRGMv2_4243_18 HRGMv2_4243_18_26 28424 29128 - GntR
pfam HRGMv2_4243_18 HRGMv2_4243_18_27 29125 30003 - GHMP_kinases_N | GHMP_kinases_C
CAZyme HRGMv2_4243_18 HRGMv2_4243_18_28 30161 31717 - CBM50
pfam HRGMv2_4243_18 HRGMv2_4243_18_29 31813 32220 - PrcB_C
pfam HRGMv2_4243_18 HRGMv2_4243_18_30 32394 33134 + Acyltransferase
TC HRGMv2_4243_18 HRGMv2_4243_18_31 33155 33682 - 9.B.156.3.1
TC HRGMv2_4243_18 HRGMv2_4243_18_32 33679 34323 - 9.B.156.3.1
Gene ID: HRGMv2_4243_18_25
Type: TC
Location: 26860 - 28344 (-)
Gene ID: HRGMv2_4243_18_26
Type: TF
Location: 28424 - 29128 (-)
Gene ID: HRGMv2_4243_18_27
Type: pfam
Location: 29125 - 30003 (-)
Gene ID: HRGMv2_4243_18_28
Type: CAZyme
Location: 30161 - 31717 (-)
Gene ID: HRGMv2_4243_18_29
Type: pfam
Location: 31813 - 32220 (-)
Gene ID: HRGMv2_4243_18_30
Type: pfam
Location: 32394 - 33134 (+)
Gene ID: HRGMv2_4243_18_31
Type: TC
Location: 33155 - 33682 (-)
Gene ID: HRGMv2_4243_18_32
Type: TC
Location: 33679 - 34323 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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