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Cluster: HRGMv2_4243_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4243_12 HRGMv2_4243_12_28 29197 30507 - GH29
TC HRGMv2_4243_12 HRGMv2_4243_12_29 30528 31379 - 3.A.1.1.47
TC HRGMv2_4243_12 HRGMv2_4243_12_30 31376 32302 - 3.A.1.1.47
TC HRGMv2_4243_12 HRGMv2_4243_12_31 32398 33678 - 3.A.1.1.47
STP HRGMv2_4243_12 HRGMv2_4243_12_32 33813 35114 - SBP_bac_1
TF HRGMv2_4243_12 HRGMv2_4243_12_33 35104 35865 - HTH_AraC | HTH_AraC
TC HRGMv2_4243_12 HRGMv2_4243_12_34 35853 37685 - 9.B.33.1.1
TC HRGMv2_4243_12 HRGMv2_4243_12_35 37856 38749 - 3.A.1.24.5
TC HRGMv2_4243_12 HRGMv2_4243_12_36 38821 39480 - 3.A.1.24.5
TC HRGMv2_4243_12 HRGMv2_4243_12_37 39470 40579 - 3.A.1.24.1
Gene ID: HRGMv2_4243_12_28
Type: CAZyme
Location: 29197 - 30507 (-)
Gene ID: HRGMv2_4243_12_29
Type: TC
Location: 30528 - 31379 (-)
Gene ID: HRGMv2_4243_12_30
Type: TC
Location: 31376 - 32302 (-)
Gene ID: HRGMv2_4243_12_31
Type: TC
Location: 32398 - 33678 (-)
Gene ID: HRGMv2_4243_12_32
Type: STP
Location: 33813 - 35114 (-)
Gene ID: HRGMv2_4243_12_33
Type: TF
Location: 35104 - 35865 (-)
Gene ID: HRGMv2_4243_12_34
Type: TC
Location: 35853 - 37685 (-)
Gene ID: HRGMv2_4243_12_35
Type: TC
Location: 37856 - 38749 (-)
Gene ID: HRGMv2_4243_12_36
Type: TC
Location: 38821 - 39480 (-)
Gene ID: HRGMv2_4243_12_37
Type: TC
Location: 39470 - 40579 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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