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Cluster: HRGMv2_4243_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4243_11 HRGMv2_4243_11_21 24135 26261 + CBM48 | GH13_9
peptidase HRGMv2_4243_11 HRGMv2_4243_11_22 26457 27818 + M20.UND
TC HRGMv2_4243_11 HRGMv2_4243_11_23 27815 28909 + 3.A.1.11.1
TC HRGMv2_4243_11 HRGMv2_4243_11_24 28906 29760 + 3.A.1.11.1
TC HRGMv2_4243_11 HRGMv2_4243_11_25 29757 30533 + 3.A.1.11.1
TC HRGMv2_4243_11 HRGMv2_4243_11_26 30572 31615 + 3.A.1.11.8
TC HRGMv2_4243_11 HRGMv2_4243_11_27 31615 32430 + 3.A.1.11.1
TC HRGMv2_4243_11 HRGMv2_4243_11_28 32445 34292 + 3.A.1.11.7
TC HRGMv2_4243_11 HRGMv2_4243_11_29 34330 35367 + 3.A.1.11.1
TC HRGMv2_4243_11 HRGMv2_4243_11_30 35451 37091 + 8.A.7.1.1
Gene ID: HRGMv2_4243_11_21
Type: CAZyme
Location: 24135 - 26261 (+)
Gene ID: HRGMv2_4243_11_22
Type: peptidase
Location: 26457 - 27818 (+)
Gene ID: HRGMv2_4243_11_23
Type: TC
Location: 27815 - 28909 (+)
Gene ID: HRGMv2_4243_11_24
Type: TC
Location: 28906 - 29760 (+)
Gene ID: HRGMv2_4243_11_25
Type: TC
Location: 29757 - 30533 (+)
Gene ID: HRGMv2_4243_11_26
Type: TC
Location: 30572 - 31615 (+)
Gene ID: HRGMv2_4243_11_27
Type: TC
Location: 31615 - 32430 (+)
Gene ID: HRGMv2_4243_11_28
Type: TC
Location: 32445 - 34292 (+)
Gene ID: HRGMv2_4243_11_29
Type: TC
Location: 34330 - 35367 (+)
Gene ID: HRGMv2_4243_11_30
Type: TC
Location: 35451 - 37091 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4243_11_29 vegan > omnivore 1.37273 0.00787

🧭 Explore Read Mapping of CGC

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