dbCAN Logo

Cluster: HRGMv2_4243_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4243_3 HRGMv2_4243_3_38 47896 49551 + 2.A.53.3.11
pfam HRGMv2_4243_3 HRGMv2_4243_3_39 49715 50107 - Ribosomal_S9
pfam HRGMv2_4243_3 HRGMv2_4243_3_40 50122 50550 - Ribosomal_L13
CAZyme HRGMv2_4243_3 HRGMv2_4243_3_41 50841 53003 - GH112
TC HRGMv2_4243_3 HRGMv2_4243_3_42 53259 54428 + 2.A.4.7.4
pfam HRGMv2_4243_3 HRGMv2_4243_3_43 54496 55236 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_4243_3 HRGMv2_4243_3_44 55264 56067 - 3.A.1.26.7
TC HRGMv2_4243_3 HRGMv2_4243_3_45 56060 56950 - 3.A.1.26.7
TC HRGMv2_4243_3 HRGMv2_4243_3_46 56941 57786 - 3.A.1.26.7
Gene ID: HRGMv2_4243_3_38
Type: TC
Location: 47896 - 49551 (+)
Gene ID: HRGMv2_4243_3_39
Type: pfam
Location: 49715 - 50107 (-)
Gene ID: HRGMv2_4243_3_40
Type: pfam
Location: 50122 - 50550 (-)
Gene ID: HRGMv2_4243_3_41
Type: CAZyme
Location: 50841 - 53003 (-)
Gene ID: HRGMv2_4243_3_42
Type: TC
Location: 53259 - 54428 (+)
Gene ID: HRGMv2_4243_3_43
Type: pfam
Location: 54496 - 55236 (-)
Gene ID: HRGMv2_4243_3_44
Type: TC
Location: 55264 - 56067 (-)
Gene ID: HRGMv2_4243_3_45
Type: TC
Location: 56060 - 56950 (-)
Gene ID: HRGMv2_4243_3_46
Type: TC
Location: 56941 - 57786 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4243_3_43 vegan > omnivore 1.04251 0.00787

🧭 Explore Read Mapping of CGC

← Back to Cluster List