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Cluster: HRGMv2_4243_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4243_1 HRGMv2_4243_1_37 42481 43056 + 3.A.1.17.3
pfam HRGMv2_4243_1 HRGMv2_4243_1_38 43104 43769 + B3_4
CAZyme HRGMv2_4243_1 HRGMv2_4243_1_39 43837 45330 - GH32
STP HRGMv2_4243_1 HRGMv2_4243_1_40 45334 47037 - SBP_bac_1
TC HRGMv2_4243_1 HRGMv2_4243_1_41 47132 48034 - 3.A.1.1.29
TC HRGMv2_4243_1 HRGMv2_4243_1_42 48047 48997 - 3.A.1.1.10
TF HRGMv2_4243_1 HRGMv2_4243_1_43 49404 50474 + LacI
TC HRGMv2_4243_1 HRGMv2_4243_1_44 50496 51125 + 9.B.28.1.2
Gene ID: HRGMv2_4243_1_37
Type: TC
Location: 42481 - 43056 (+)
Gene ID: HRGMv2_4243_1_38
Type: pfam
Location: 43104 - 43769 (+)
Gene ID: HRGMv2_4243_1_39
Type: CAZyme
Location: 43837 - 45330 (-)
Gene ID: HRGMv2_4243_1_40
Type: STP
Location: 45334 - 47037 (-)
Gene ID: HRGMv2_4243_1_41
Type: TC
Location: 47132 - 48034 (-)
Gene ID: HRGMv2_4243_1_42
Type: TC
Location: 48047 - 48997 (-)
Gene ID: HRGMv2_4243_1_43
Type: TF
Location: 49404 - 50474 (+)
Gene ID: HRGMv2_4243_1_44
Type: TC
Location: 50496 - 51125 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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