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Cluster: HRGMv2_4242_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4242_6 HRGMv2_4242_6_29 40895 42700 - 1.E.43.3.3
pfam HRGMv2_4242_6 HRGMv2_4242_6_30 42712 43479 - PP2C_2
pfam HRGMv2_4242_6 HRGMv2_4242_6_31 43884 44648 - TatD_DNase
TC HRGMv2_4242_6 HRGMv2_4242_6_32 44638 45771 - 2.A.86.1.8
TC HRGMv2_4242_6 HRGMv2_4242_6_33 45798 48404 - 3.A.3.2.21
TC HRGMv2_4242_6 HRGMv2_4242_6_34 48650 49567 - 8.A.5.1.7
CAZyme HRGMv2_4242_6 HRGMv2_4242_6_35 49589 51841 - GH31_3
pfam HRGMv2_4242_6 HRGMv2_4242_6_36 51858 52679 - AP_endonuc_2
pfam HRGMv2_4242_6 HRGMv2_4242_6_37 52676 53383 - ThuA
CAZyme HRGMv2_4242_6 HRGMv2_4242_6_38 53406 55613 - GH3
CAZyme HRGMv2_4242_6 HRGMv2_4242_6_39 55681 57804 - GH36
TC HRGMv2_4242_6 HRGMv2_4242_6_40 57813 58682 - 3.A.1.1.47
TC HRGMv2_4242_6 HRGMv2_4242_6_41 58689 59576 - 3.A.1.1.36
STP HRGMv2_4242_6 HRGMv2_4242_6_42 59641 61083 - SBP_bac_1
TF HRGMv2_4242_6 HRGMv2_4242_6_43 61163 62194 - LacI
CAZyme HRGMv2_4242_6 HRGMv2_4242_6_44 62614 65049 + GH94
CAZyme HRGMv2_4242_6 HRGMv2_4242_6_45 65082 67571 + GH2
pfam HRGMv2_4242_6 HRGMv2_4242_6_46 67654 69612 - tRNA-synt_1 | tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Anticodon_3
TC HRGMv2_4242_6 HRGMv2_4242_6_47 69992 71368 - 2.A.25.1.3
TC HRGMv2_4242_6 HRGMv2_4242_6_48 71818 74466 - 9.B.74.1.4
Gene ID: HRGMv2_4242_6_29
Type: TC
Location: 40895 - 42700 (-)
Gene ID: HRGMv2_4242_6_30
Type: pfam
Location: 42712 - 43479 (-)
Gene ID: HRGMv2_4242_6_31
Type: pfam
Location: 43884 - 44648 (-)
Gene ID: HRGMv2_4242_6_32
Type: TC
Location: 44638 - 45771 (-)
Gene ID: HRGMv2_4242_6_33
Type: TC
Location: 45798 - 48404 (-)
Gene ID: HRGMv2_4242_6_34
Type: TC
Location: 48650 - 49567 (-)
Gene ID: HRGMv2_4242_6_35
Type: CAZyme
Location: 49589 - 51841 (-)
Gene ID: HRGMv2_4242_6_36
Type: pfam
Location: 51858 - 52679 (-)
Gene ID: HRGMv2_4242_6_37
Type: pfam
Location: 52676 - 53383 (-)
Gene ID: HRGMv2_4242_6_38
Type: CAZyme
Location: 53406 - 55613 (-)
Gene ID: HRGMv2_4242_6_39
Type: CAZyme
Location: 55681 - 57804 (-)
Gene ID: HRGMv2_4242_6_40
Type: TC
Location: 57813 - 58682 (-)
Gene ID: HRGMv2_4242_6_41
Type: TC
Location: 58689 - 59576 (-)
Gene ID: HRGMv2_4242_6_42
Type: STP
Location: 59641 - 61083 (-)
Gene ID: HRGMv2_4242_6_43
Type: TF
Location: 61163 - 62194 (-)
Gene ID: HRGMv2_4242_6_44
Type: CAZyme
Location: 62614 - 65049 (+)
Gene ID: HRGMv2_4242_6_45
Type: CAZyme
Location: 65082 - 67571 (+)
Gene ID: HRGMv2_4242_6_46
Type: pfam
Location: 67654 - 69612 (-)
Gene ID: HRGMv2_4242_6_47
Type: TC
Location: 69992 - 71368 (-)
Gene ID: HRGMv2_4242_6_48
Type: TC
Location: 71818 - 74466 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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