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Cluster: HRGMv2_4242_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4242_44 HRGMv2_4242_44_2 1120 3525 - GH35
TF HRGMv2_4242_44 HRGMv2_4242_44_3 3567 4592 - LacI
STP HRGMv2_4242_44 HRGMv2_4242_44_4 4746 6305 - SBP_bac_1
TC HRGMv2_4242_44 HRGMv2_4242_44_5 6376 7287 - 3.A.1.1.29
TC HRGMv2_4242_44 HRGMv2_4242_44_6 7302 8237 - 3.A.1.1.10
CAZyme HRGMv2_4242_44 HRGMv2_4242_44_7 8617 11925 + GH94
CAZyme HRGMv2_4242_44 HRGMv2_4242_44_8 11938 14085 + GH3
pfam HRGMv2_4242_44 HRGMv2_4242_44_9 14242 15516 + URO-D
CAZyme HRGMv2_4242_44 HRGMv2_4242_44_10 15608 20095 - GH136
NULL(UNKNOWN) HRGMv2_4242_44 HRGMv2_4242_44_11 20107 20892 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4242_44 HRGMv2_4242_44_12 21249 22838 - 2.A.36.6.4
Gene ID: HRGMv2_4242_44_2
Type: CAZyme
Location: 1120 - 3525 (-)
Gene ID: HRGMv2_4242_44_3
Type: TF
Location: 3567 - 4592 (-)
Gene ID: HRGMv2_4242_44_4
Type: STP
Location: 4746 - 6305 (-)
Gene ID: HRGMv2_4242_44_5
Type: TC
Location: 6376 - 7287 (-)
Gene ID: HRGMv2_4242_44_6
Type: TC
Location: 7302 - 8237 (-)
Gene ID: HRGMv2_4242_44_7
Type: CAZyme
Location: 8617 - 11925 (+)
Gene ID: HRGMv2_4242_44_8
Type: CAZyme
Location: 11938 - 14085 (+)
Gene ID: HRGMv2_4242_44_9
Type: pfam
Location: 14242 - 15516 (+)
Gene ID: HRGMv2_4242_44_10
Type: CAZyme
Location: 15608 - 20095 (-)
Gene ID: HRGMv2_4242_44_11
Type:
Location: 20107 - 20892 (-)
Gene ID: HRGMv2_4242_44_12
Type: TC
Location: 21249 - 22838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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