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Cluster: HRGMv2_4242_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4242_41 HRGMv2_4242_41_9 7253 9136 + 8.A.59.2.1
TF HRGMv2_4242_41 HRGMv2_4242_41_10 9138 9884 + HTH_AraC
STP HRGMv2_4242_41 HRGMv2_4242_41_11 10101 11444 + SBP_bac_1
TC HRGMv2_4242_41 HRGMv2_4242_41_12 11540 12433 + 3.A.1.1.41
TC HRGMv2_4242_41 HRGMv2_4242_41_13 12436 13308 + 3.A.1.1.6
CAZyme HRGMv2_4242_41 HRGMv2_4242_41_14 13424 15490 + GH31_5
CAZyme HRGMv2_4242_41 HRGMv2_4242_41_15 15518 17506 + GH31_4
TC HRGMv2_4242_41 HRGMv2_4242_41_16 17610 18251 + 9.B.28.1.2
CAZyme HRGMv2_4242_41 HRGMv2_4242_41_17 18295 20541 + GH31_3
pfam HRGMv2_4242_41 HRGMv2_4242_41_18 20789 21838 + PDDEXK_2
NULL(UNKNOWN) HRGMv2_4242_41 HRGMv2_4242_41_19 21935 22762 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4242_41 HRGMv2_4242_41_20 22756 23454 - 3.A.1.132.6
Gene ID: HRGMv2_4242_41_9
Type: TC
Location: 7253 - 9136 (+)
Gene ID: HRGMv2_4242_41_10
Type: TF
Location: 9138 - 9884 (+)
Gene ID: HRGMv2_4242_41_11
Type: STP
Location: 10101 - 11444 (+)
Gene ID: HRGMv2_4242_41_12
Type: TC
Location: 11540 - 12433 (+)
Gene ID: HRGMv2_4242_41_13
Type: TC
Location: 12436 - 13308 (+)
Gene ID: HRGMv2_4242_41_14
Type: CAZyme
Location: 13424 - 15490 (+)
Gene ID: HRGMv2_4242_41_15
Type: CAZyme
Location: 15518 - 17506 (+)
Gene ID: HRGMv2_4242_41_16
Type: TC
Location: 17610 - 18251 (+)
Gene ID: HRGMv2_4242_41_17
Type: CAZyme
Location: 18295 - 20541 (+)
Gene ID: HRGMv2_4242_41_18
Type: pfam
Location: 20789 - 21838 (+)
Gene ID: HRGMv2_4242_41_19
Type:
Location: 21935 - 22762 (-)
Gene ID: HRGMv2_4242_41_20
Type: TC
Location: 22756 - 23454 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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