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Cluster: HRGMv2_4242_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4242_29 HRGMv2_4242_29_19 18308 20161 + CE20 | CE20
CAZyme HRGMv2_4242_29 HRGMv2_4242_29_20 20170 23580 + GH2
CAZyme HRGMv2_4242_29 HRGMv2_4242_29_21 23782 25764 + GH67
TC HRGMv2_4242_29 HRGMv2_4242_29_22 25805 26755 + 3.A.1.1.10
TC HRGMv2_4242_29 HRGMv2_4242_29_23 26771 27643 + 3.A.1.1.29
STP HRGMv2_4242_29 HRGMv2_4242_29_24 27707 29395 + SBP_bac_1
CAZyme HRGMv2_4242_29 HRGMv2_4242_29_25 29468 32389 + GH115
Gene ID: HRGMv2_4242_29_19
Type: CAZyme
Location: 18308 - 20161 (+)
Gene ID: HRGMv2_4242_29_20
Type: CAZyme
Location: 20170 - 23580 (+)
Gene ID: HRGMv2_4242_29_21
Type: CAZyme
Location: 23782 - 25764 (+)
Gene ID: HRGMv2_4242_29_22
Type: TC
Location: 25805 - 26755 (+)
Gene ID: HRGMv2_4242_29_23
Type: TC
Location: 26771 - 27643 (+)
Gene ID: HRGMv2_4242_29_24
Type: STP
Location: 27707 - 29395 (+)
Gene ID: HRGMv2_4242_29_25
Type: CAZyme
Location: 29468 - 32389 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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