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Cluster: HRGMv2_4242_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4242_25 HRGMv2_4242_25_26 30142 31959 - 8.A.59.2.1
STP HRGMv2_4242_25 HRGMv2_4242_25_27 32207 33523 + SBP_bac_1
TC HRGMv2_4242_25 HRGMv2_4242_25_28 33525 34520 + 3.A.1.1.11
TC HRGMv2_4242_25 HRGMv2_4242_25_29 34525 35370 + 3.A.1.1.11
CAZyme HRGMv2_4242_25 HRGMv2_4242_25_30 35384 36379 + GH177
pfam HRGMv2_4242_25 HRGMv2_4242_25_31 36394 37575 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
pfam HRGMv2_4242_25 HRGMv2_4242_25_32 37572 38423 + AP_endonuc_2
CAZyme HRGMv2_4242_25 HRGMv2_4242_25_33 38501 40300 + GH2
Gene ID: HRGMv2_4242_25_26
Type: TC
Location: 30142 - 31959 (-)
Gene ID: HRGMv2_4242_25_27
Type: STP
Location: 32207 - 33523 (+)
Gene ID: HRGMv2_4242_25_28
Type: TC
Location: 33525 - 34520 (+)
Gene ID: HRGMv2_4242_25_29
Type: TC
Location: 34525 - 35370 (+)
Gene ID: HRGMv2_4242_25_30
Type: CAZyme
Location: 35384 - 36379 (+)
Gene ID: HRGMv2_4242_25_31
Type: pfam
Location: 36394 - 37575 (+)
Gene ID: HRGMv2_4242_25_32
Type: pfam
Location: 37572 - 38423 (+)
Gene ID: HRGMv2_4242_25_33
Type: CAZyme
Location: 38501 - 40300 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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