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Cluster: HRGMv2_4242_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4242_19 HRGMv2_4242_19_60 47311 48324 + 8.A.5.1.6
TF HRGMv2_4242_19 HRGMv2_4242_19_61 48502 49872 + HTH_AraC
TF HRGMv2_4242_19 HRGMv2_4242_19_62 49939 51552 - HTH_AraC
TC HRGMv2_4242_19 HRGMv2_4242_19_63 51530 53344 - 8.A.59.2.1
STP HRGMv2_4242_19 HRGMv2_4242_19_64 53611 54942 + SBP_bac_1
TC HRGMv2_4242_19 HRGMv2_4242_19_65 55024 55938 + 3.A.1.1.20
TC HRGMv2_4242_19 HRGMv2_4242_19_66 55950 56783 + 3.A.1.1.11
CAZyme HRGMv2_4242_19 HRGMv2_4242_19_67 56819 58597 + GH2
CAZyme HRGMv2_4242_19 HRGMv2_4242_19_68 58591 60696 + GH31_3
TC HRGMv2_4242_19 HRGMv2_4242_19_69 60863 61795 + 3.A.1.1.10
Gene ID: HRGMv2_4242_19_60
Type: TC
Location: 47311 - 48324 (+)
Gene ID: HRGMv2_4242_19_61
Type: TF
Location: 48502 - 49872 (+)
Gene ID: HRGMv2_4242_19_62
Type: TF
Location: 49939 - 51552 (-)
Gene ID: HRGMv2_4242_19_63
Type: TC
Location: 51530 - 53344 (-)
Gene ID: HRGMv2_4242_19_64
Type: STP
Location: 53611 - 54942 (+)
Gene ID: HRGMv2_4242_19_65
Type: TC
Location: 55024 - 55938 (+)
Gene ID: HRGMv2_4242_19_66
Type: TC
Location: 55950 - 56783 (+)
Gene ID: HRGMv2_4242_19_67
Type: CAZyme
Location: 56819 - 58597 (+)
Gene ID: HRGMv2_4242_19_68
Type: CAZyme
Location: 58591 - 60696 (+)
Gene ID: HRGMv2_4242_19_69
Type: TC
Location: 60863 - 61795 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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