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Cluster: HRGMv2_4242_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4242_16 HRGMv2_4242_16_26 29190 29750 - 2.A.107.1.2
CAZyme HRGMv2_4242_16 HRGMv2_4242_16_27 29922 31511 + CBM91 | GH43_12
NULL(UNKNOWN) HRGMv2_4242_16 HRGMv2_4242_16_28 31596 32627 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4242_16 HRGMv2_4242_16_29 32662 34779 - GH3
TF HRGMv2_4242_16 HRGMv2_4242_16_30 34857 36434 - HTH_AraC | HTH_AraC
TC HRGMv2_4242_16 HRGMv2_4242_16_31 36427 38220 - 8.A.59.2.1
TC HRGMv2_4242_16 HRGMv2_4242_16_32 38352 39200 - 3.A.1.1.18
TC HRGMv2_4242_16 HRGMv2_4242_16_33 39205 40107 - 3.A.1.1.32
STP HRGMv2_4242_16 HRGMv2_4242_16_34 40196 41527 - SBP_bac_1
TC HRGMv2_4242_16 HRGMv2_4242_16_35 41775 43115 + 2.A.66.1.37
Gene ID: HRGMv2_4242_16_26
Type: TC
Location: 29190 - 29750 (-)
Gene ID: HRGMv2_4242_16_27
Type: CAZyme
Location: 29922 - 31511 (+)
Gene ID: HRGMv2_4242_16_28
Type:
Location: 31596 - 32627 (-)
Gene ID: HRGMv2_4242_16_29
Type: CAZyme
Location: 32662 - 34779 (-)
Gene ID: HRGMv2_4242_16_30
Type: TF
Location: 34857 - 36434 (-)
Gene ID: HRGMv2_4242_16_31
Type: TC
Location: 36427 - 38220 (-)
Gene ID: HRGMv2_4242_16_32
Type: TC
Location: 38352 - 39200 (-)
Gene ID: HRGMv2_4242_16_33
Type: TC
Location: 39205 - 40107 (-)
Gene ID: HRGMv2_4242_16_34
Type: STP
Location: 40196 - 41527 (-)
Gene ID: HRGMv2_4242_16_35
Type: TC
Location: 41775 - 43115 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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