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Cluster: HRGMv2_4241_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4241_6 HRGMv2_4241_6_7 7807 9876 + GH106
TF HRGMv2_4241_6 HRGMv2_4241_6_8 10259 11179 + HTH_5
TC HRGMv2_4241_6 HRGMv2_4241_6_9 11526 12920 + 3.A.1.1.36
TC HRGMv2_4241_6 HRGMv2_4241_6_10 13009 13896 + 3.A.1.1.36
TC HRGMv2_4241_6 HRGMv2_4241_6_11 13898 14728 + 3.A.1.1.36
pfam HRGMv2_4241_6 HRGMv2_4241_6_12 14733 15746 + Acyl_transf_3 | HGSNAT_cat
CAZyme HRGMv2_4241_6 HRGMv2_4241_6_13 15762 17567 + GH2
CAZyme HRGMv2_4241_6 HRGMv2_4241_6_14 17803 19605 + GH2
pfam HRGMv2_4241_6 HRGMv2_4241_6_15 19886 20833 + Ldh_1_N | TrkA_N | Ldh_1_C | F420_oxidored
TC HRGMv2_4241_6 HRGMv2_4241_6_16 20865 21671 + 3.D.10.1.4
Gene ID: HRGMv2_4241_6_7
Type: CAZyme
Location: 7807 - 9876 (+)
Gene ID: HRGMv2_4241_6_8
Type: TF
Location: 10259 - 11179 (+)
Gene ID: HRGMv2_4241_6_9
Type: TC
Location: 11526 - 12920 (+)
Gene ID: HRGMv2_4241_6_10
Type: TC
Location: 13009 - 13896 (+)
Gene ID: HRGMv2_4241_6_11
Type: TC
Location: 13898 - 14728 (+)
Gene ID: HRGMv2_4241_6_12
Type: pfam
Location: 14733 - 15746 (+)
Gene ID: HRGMv2_4241_6_13
Type: CAZyme
Location: 15762 - 17567 (+)
Gene ID: HRGMv2_4241_6_14
Type: CAZyme
Location: 17803 - 19605 (+)
Gene ID: HRGMv2_4241_6_15
Type: pfam
Location: 19886 - 20833 (+)
Gene ID: HRGMv2_4241_6_16
Type: TC
Location: 20865 - 21671 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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