Cluster: HRGMv2_4241_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4241
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4241_62 | HRGMv2_4241_62_4 | 2084 | 3037 | + | 3.A.1.1.10 |
| STP | HRGMv2_4241_62 | HRGMv2_4241_62_5 | 3063 | 4814 | + | SBP_bac_1 |
| TC | HRGMv2_4241_62 | HRGMv2_4241_62_6 | 4874 | 5776 | + | 3.A.1.1.29 |
| STP | HRGMv2_4241_62 | HRGMv2_4241_62_7 | 5956 | 6900 | + | PfkB |
| CAZyme | HRGMv2_4241_62 | HRGMv2_4241_62_8 | 6920 | 8278 | + | GH4 |
Gene ID: HRGMv2_4241_62_4
Type: TC
Location: 2084 - 3037 (+)
Type: TC
Location: 2084 - 3037 (+)
Gene ID: HRGMv2_4241_62_5
Type: STP
Location: 3063 - 4814 (+)
Type: STP
Location: 3063 - 4814 (+)
Gene ID: HRGMv2_4241_62_6
Type: TC
Location: 4874 - 5776 (+)
Type: TC
Location: 4874 - 5776 (+)
Gene ID: HRGMv2_4241_62_7
Type: STP
Location: 5956 - 6900 (+)
Type: STP
Location: 5956 - 6900 (+)
Gene ID: HRGMv2_4241_62_8
Type: CAZyme
Location: 6920 - 8278 (+)
Type: CAZyme
Location: 6920 - 8278 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp002361775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4241_62_4 | vegan > omnivore | 1.19507 | 0.03779 |
| HRGMv2_4241_62_4 | vegetarian > omnivore | 2.03653 | 0.02628 |