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Cluster: HRGMv2_4241_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4241_37 HRGMv2_4241_37_6 5909 7627 + 9.B.33.1.1
TF HRGMv2_4241_37 HRGMv2_4241_37_7 7644 8693 + HTH_AraC | HTH_AraC
STP HRGMv2_4241_37 HRGMv2_4241_37_8 8704 9966 + SBP_bac_1
TC HRGMv2_4241_37 HRGMv2_4241_37_9 10167 11480 + 3.A.1.1.40
TC HRGMv2_4241_37 HRGMv2_4241_37_10 11541 12437 + 3.A.1.1.11
TC HRGMv2_4241_37 HRGMv2_4241_37_11 12451 13281 + 3.A.1.1.34
pfam HRGMv2_4241_37 HRGMv2_4241_37_12 13303 14541 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
pfam HRGMv2_4241_37 HRGMv2_4241_37_13 14614 15531 - EamA | EamA
TC HRGMv2_4241_37 HRGMv2_4241_37_14 16363 16860 + 2.A.3.7.4
TC HRGMv2_4241_37 HRGMv2_4241_37_15 16914 17168 + 2.A.3.7.4
NULL(UNKNOWN) HRGMv2_4241_37 HRGMv2_4241_37_16 17171 17323 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4241_37 HRGMv2_4241_37_17 17345 19828 + GH2
Gene ID: HRGMv2_4241_37_6
Type: TC
Location: 5909 - 7627 (+)
Gene ID: HRGMv2_4241_37_7
Type: TF
Location: 7644 - 8693 (+)
Gene ID: HRGMv2_4241_37_8
Type: STP
Location: 8704 - 9966 (+)
Gene ID: HRGMv2_4241_37_9
Type: TC
Location: 10167 - 11480 (+)
Gene ID: HRGMv2_4241_37_10
Type: TC
Location: 11541 - 12437 (+)
Gene ID: HRGMv2_4241_37_11
Type: TC
Location: 12451 - 13281 (+)
Gene ID: HRGMv2_4241_37_12
Type: pfam
Location: 13303 - 14541 (+)
Gene ID: HRGMv2_4241_37_13
Type: pfam
Location: 14614 - 15531 (-)
Gene ID: HRGMv2_4241_37_14
Type: TC
Location: 16363 - 16860 (+)
Gene ID: HRGMv2_4241_37_15
Type: TC
Location: 16914 - 17168 (+)
Gene ID: HRGMv2_4241_37_16
Type:
Location: 17171 - 17323 (+)
Gene ID: HRGMv2_4241_37_17
Type: CAZyme
Location: 17345 - 19828 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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