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Cluster: HRGMv2_4241_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4241_11 HRGMv2_4241_11_12 12501 14018 + 4.C.1.1.7
pfam HRGMv2_4241_11 HRGMv2_4241_11_13 14020 15228 + Orn_DAP_Arg_deC | Ala_racemase_N | Orn_Arg_deC_N
NULL(UNKNOWN) HRGMv2_4241_11 HRGMv2_4241_11_14 15225 15455 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4241_11 HRGMv2_4241_11_15 15459 16967 + 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_4241_11 HRGMv2_4241_11_16 16954 17940 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4241_11 HRGMv2_4241_11_17 18003 18521 + Macro
CAZyme HRGMv2_4241_11 HRGMv2_4241_11_18 18706 21804 + GH38
TC HRGMv2_4241_11 HRGMv2_4241_11_19 21926 23293 + 2.A.66.1.33
NULL(UNKNOWN) HRGMv2_4241_11 HRGMv2_4241_11_20 23343 23600 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_4241_11 HRGMv2_4241_11_21 23868 24716 + SBP_bac_1
TC HRGMv2_4241_11 HRGMv2_4241_11_22 24728 25396 + 3.A.1.8.2
TC HRGMv2_4241_11 HRGMv2_4241_11_23 25393 26436 + 3.A.1.11.6
Gene ID: HRGMv2_4241_11_12
Type: TC
Location: 12501 - 14018 (+)
Gene ID: HRGMv2_4241_11_13
Type: pfam
Location: 14020 - 15228 (+)
Gene ID: HRGMv2_4241_11_14
Type:
Location: 15225 - 15455 (+)
Gene ID: HRGMv2_4241_11_15
Type: TC
Location: 15459 - 16967 (+)
Gene ID: HRGMv2_4241_11_16
Type:
Location: 16954 - 17940 (+)
Gene ID: HRGMv2_4241_11_17
Type: pfam
Location: 18003 - 18521 (+)
Gene ID: HRGMv2_4241_11_18
Type: CAZyme
Location: 18706 - 21804 (+)
Gene ID: HRGMv2_4241_11_19
Type: TC
Location: 21926 - 23293 (+)
Gene ID: HRGMv2_4241_11_20
Type:
Location: 23343 - 23600 (+)
Gene ID: HRGMv2_4241_11_21
Type: STP
Location: 23868 - 24716 (+)
Gene ID: HRGMv2_4241_11_22
Type: TC
Location: 24728 - 25396 (+)
Gene ID: HRGMv2_4241_11_23
Type: TC
Location: 25393 - 26436 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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