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Cluster: HRGMv2_4241_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4241_8 HRGMv2_4241_8_31 29880 31226 + 3.A.1.1.4
TC HRGMv2_4241_8 HRGMv2_4241_8_32 31333 32220 + 3.A.1.1.4
TC HRGMv2_4241_8 HRGMv2_4241_8_33 32217 33026 + 3.A.1.1.4
CAZyme HRGMv2_4241_8 HRGMv2_4241_8_34 33097 36135 + GH2
CAZyme HRGMv2_4241_8 HRGMv2_4241_8_35 36208 38241 + GH42
pfam HRGMv2_4241_8 HRGMv2_4241_8_36 38266 39786 + GalP_UDP_transf | GalP_UDP_tr_C
TC HRGMv2_4241_8 HRGMv2_4241_8_37 40333 41682 + 2.A.25.1.3
TC HRGMv2_4241_8 HRGMv2_4241_8_38 42241 42648 + 3.A.1.5.6
Gene ID: HRGMv2_4241_8_31
Type: TC
Location: 29880 - 31226 (+)
Gene ID: HRGMv2_4241_8_32
Type: TC
Location: 31333 - 32220 (+)
Gene ID: HRGMv2_4241_8_33
Type: TC
Location: 32217 - 33026 (+)
Gene ID: HRGMv2_4241_8_34
Type: CAZyme
Location: 33097 - 36135 (+)
Gene ID: HRGMv2_4241_8_35
Type: CAZyme
Location: 36208 - 38241 (+)
Gene ID: HRGMv2_4241_8_36
Type: pfam
Location: 38266 - 39786 (+)
Gene ID: HRGMv2_4241_8_37
Type: TC
Location: 40333 - 41682 (+)
Gene ID: HRGMv2_4241_8_38
Type: TC
Location: 42241 - 42648 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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