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Cluster: HRGMv2_4235_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4235_1 HRGMv2_4235_1_191 180447 181382 + 3.A.1.7.5
TC HRGMv2_4235_1 HRGMv2_4235_1_192 181411 182262 + 3.A.1.7.5
TC HRGMv2_4235_1 HRGMv2_4235_1_193 182266 183186 + 3.A.1.7.5
TC HRGMv2_4235_1 HRGMv2_4235_1_194 183214 183969 + 3.A.1.7.5
pfam HRGMv2_4235_1 HRGMv2_4235_1_195 183974 184615 + PhoU | PhoU
TC HRGMv2_4235_1 HRGMv2_4235_1_196 184721 185737 + 2.A.58.2.2
TF HRGMv2_4235_1 HRGMv2_4235_1_197 185844 186515 + Trans_reg_C
STP HRGMv2_4235_1 HRGMv2_4235_1_198 186519 187832 + HATPase_c | HisKA
TC HRGMv2_4235_1 HRGMv2_4235_1_199 188073 188936 + 3.A.1.3.20
TC HRGMv2_4235_1 HRGMv2_4235_1_200 189010 189795 + 3.A.1.3.20
TC HRGMv2_4235_1 HRGMv2_4235_1_201 189795 190541 + 3.A.1.3.20
TC HRGMv2_4235_1 HRGMv2_4235_1_202 190711 191568 - 9.A.8.1.5
pfam HRGMv2_4235_1 HRGMv2_4235_1_203 191632 192801 - Resolvase | Recombinase | Zn_ribbon_recom
NULL(UNKNOWN) HRGMv2_4235_1 HRGMv2_4235_1_204 193004 193177 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4235_1 HRGMv2_4235_1_205 193161 193379 + 1.E.18.1.3
CAZyme HRGMv2_4235_1 HRGMv2_4235_1_206 193372 194229 + GH25
TC HRGMv2_4235_1 HRGMv2_4235_1_207 194149 195558 - 9.A.8.1.5
Gene ID: HRGMv2_4235_1_191
Type: TC
Location: 180447 - 181382 (+)
Gene ID: HRGMv2_4235_1_192
Type: TC
Location: 181411 - 182262 (+)
Gene ID: HRGMv2_4235_1_193
Type: TC
Location: 182266 - 183186 (+)
Gene ID: HRGMv2_4235_1_194
Type: TC
Location: 183214 - 183969 (+)
Gene ID: HRGMv2_4235_1_195
Type: pfam
Location: 183974 - 184615 (+)
Gene ID: HRGMv2_4235_1_196
Type: TC
Location: 184721 - 185737 (+)
Gene ID: HRGMv2_4235_1_197
Type: TF
Location: 185844 - 186515 (+)
Gene ID: HRGMv2_4235_1_198
Type: STP
Location: 186519 - 187832 (+)
Gene ID: HRGMv2_4235_1_199
Type: TC
Location: 188073 - 188936 (+)
Gene ID: HRGMv2_4235_1_200
Type: TC
Location: 189010 - 189795 (+)
Gene ID: HRGMv2_4235_1_201
Type: TC
Location: 189795 - 190541 (+)
Gene ID: HRGMv2_4235_1_202
Type: TC
Location: 190711 - 191568 (-)
Gene ID: HRGMv2_4235_1_203
Type: pfam
Location: 191632 - 192801 (-)
Gene ID: HRGMv2_4235_1_204
Type:
Location: 193004 - 193177 (+)
Gene ID: HRGMv2_4235_1_205
Type: TC
Location: 193161 - 193379 (+)
Gene ID: HRGMv2_4235_1_206
Type: CAZyme
Location: 193372 - 194229 (+)
Gene ID: HRGMv2_4235_1_207
Type: TC
Location: 194149 - 195558 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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