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Cluster: HRGMv2_4235_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4235_1 HRGMv2_4235_1_159 143439 144548 - 3.A.1.1.26
pfam HRGMv2_4235_1 HRGMv2_4235_1_160 144788 145399 - Metallophos | Metallophos_2
pfam HRGMv2_4235_1 HRGMv2_4235_1_161 145396 147375 - Bmp
CAZyme HRGMv2_4235_1 HRGMv2_4235_1_162 147713 149275 + GH32
TF HRGMv2_4235_1 HRGMv2_4235_1_163 149390 150367 + LacI
NULL(UNKNOWN) HRGMv2_4235_1 HRGMv2_4235_1_164 150501 151277 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4235_1 HRGMv2_4235_1_165 151369 152067 - 9.B.28.1.8
pfam HRGMv2_4235_1 HRGMv2_4235_1_166 152483 153763 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_4235_1 HRGMv2_4235_1_167 153905 154786 + 3.A.1.1.45
TC HRGMv2_4235_1 HRGMv2_4235_1_168 154786 155643 + 3.A.1.1.45
CAZyme HRGMv2_4235_1 HRGMv2_4235_1_169 155863 158043 + GH36
CAZyme HRGMv2_4235_1 HRGMv2_4235_1_170 158125 160575 + GH13_4
STP HRGMv2_4235_1 HRGMv2_4235_1_171 160595 161548 + PfkB
CAZyme HRGMv2_4235_1 HRGMv2_4235_1_172 161627 164080 + GH3
Gene ID: HRGMv2_4235_1_159
Type: TC
Location: 143439 - 144548 (-)
Gene ID: HRGMv2_4235_1_160
Type: pfam
Location: 144788 - 145399 (-)
Gene ID: HRGMv2_4235_1_161
Type: pfam
Location: 145396 - 147375 (-)
Gene ID: HRGMv2_4235_1_162
Type: CAZyme
Location: 147713 - 149275 (+)
Gene ID: HRGMv2_4235_1_163
Type: TF
Location: 149390 - 150367 (+)
Gene ID: HRGMv2_4235_1_164
Type:
Location: 150501 - 151277 (-)
Gene ID: HRGMv2_4235_1_165
Type: TC
Location: 151369 - 152067 (-)
Gene ID: HRGMv2_4235_1_166
Type: pfam
Location: 152483 - 153763 (+)
Gene ID: HRGMv2_4235_1_167
Type: TC
Location: 153905 - 154786 (+)
Gene ID: HRGMv2_4235_1_168
Type: TC
Location: 154786 - 155643 (+)
Gene ID: HRGMv2_4235_1_169
Type: CAZyme
Location: 155863 - 158043 (+)
Gene ID: HRGMv2_4235_1_170
Type: CAZyme
Location: 158125 - 160575 (+)
Gene ID: HRGMv2_4235_1_171
Type: STP
Location: 160595 - 161548 (+)
Gene ID: HRGMv2_4235_1_172
Type: CAZyme
Location: 161627 - 164080 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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