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Cluster: HRGMv2_4235_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4235_7 HRGMv2_4235_7_18 21293 23560 - GT35
TF HRGMv2_4235_7 HRGMv2_4235_7_19 23707 24606 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4235_7 HRGMv2_4235_7_20 24689 26185 - GH77
pfam HRGMv2_4235_7 HRGMv2_4235_7_21 26202 27149 - Exo_endo_phos
TC HRGMv2_4235_7 HRGMv2_4235_7_22 27235 29466 - 4.A.1.1.11
TF HRGMv2_4235_7 HRGMv2_4235_7_23 29761 30786 + LacI
pfam HRGMv2_4235_7 HRGMv2_4235_7_24 30798 31553 + DUF3800
TC HRGMv2_4235_7 HRGMv2_4235_7_25 31888 32730 + 2.A.115.1.5
Gene ID: HRGMv2_4235_7_18
Type: CAZyme
Location: 21293 - 23560 (-)
Gene ID: HRGMv2_4235_7_19
Type: TF
Location: 23707 - 24606 (+)
Gene ID: HRGMv2_4235_7_20
Type: CAZyme
Location: 24689 - 26185 (-)
Gene ID: HRGMv2_4235_7_21
Type: pfam
Location: 26202 - 27149 (-)
Gene ID: HRGMv2_4235_7_22
Type: TC
Location: 27235 - 29466 (-)
Gene ID: HRGMv2_4235_7_23
Type: TF
Location: 29761 - 30786 (+)
Gene ID: HRGMv2_4235_7_24
Type: pfam
Location: 30798 - 31553 (+)
Gene ID: HRGMv2_4235_7_25
Type: TC
Location: 31888 - 32730 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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