Cluster: HRGMv2_4232_CGC30
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4232
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4232_21 | HRGMv2_4232_21_3 | 2046 | 3035 | - | GT2 |
| pfam | HRGMv2_4232_21 | HRGMv2_4232_21_4 | 3071 | 4171 | - | EpsG |
| pfam | HRGMv2_4232_21 | HRGMv2_4232_21_5 | 4168 | 5148 | - | DUF6625 |
| CAZyme | HRGMv2_4232_21 | HRGMv2_4232_21_6 | 5138 | 6205 | - | GT2 |
| CAZyme | HRGMv2_4232_21 | HRGMv2_4232_21_7 | 6373 | 7506 | - | GT4 |
| pfam | HRGMv2_4232_21 | HRGMv2_4232_21_8 | 7509 | 8651 | - | DegT_DnrJ_EryC1 |
| pfam | HRGMv2_4232_21 | HRGMv2_4232_21_9 | 8611 | 9294 | - | PglD_N |
| TC | HRGMv2_4232_21 | HRGMv2_4232_21_10 | 9297 | 9899 | - | 9.B.18.1.2 |
| TC | HRGMv2_4232_21 | HRGMv2_4232_21_11 | 9905 | 11800 | - | 9.B.18.2.1 |
| TC | HRGMv2_4232_21 | HRGMv2_4232_21_12 | 11964 | 12668 | - | 8.A.3.2.1 |
| TC | HRGMv2_4232_21 | HRGMv2_4232_21_13 | 12680 | 13375 | - | 8.A.3.2.4 |
| pfam | HRGMv2_4232_21 | HRGMv2_4232_21_14 | 14016 | 14861 | - | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_4232_21 | HRGMv2_4232_21_15 | 14956 | 16365 | - | GH1 |
| TC | HRGMv2_4232_21 | HRGMv2_4232_21_16 | 16389 | 18251 | - | 4.A.1.2.11 |
Gene ID: HRGMv2_4232_21_3
Type: CAZyme
Location: 2046 - 3035 (-)
Type: CAZyme
Location: 2046 - 3035 (-)
Gene ID: HRGMv2_4232_21_4
Type: pfam
Location: 3071 - 4171 (-)
Type: pfam
Location: 3071 - 4171 (-)
Gene ID: HRGMv2_4232_21_5
Type: pfam
Location: 4168 - 5148 (-)
Type: pfam
Location: 4168 - 5148 (-)
Gene ID: HRGMv2_4232_21_6
Type: CAZyme
Location: 5138 - 6205 (-)
Type: CAZyme
Location: 5138 - 6205 (-)
Gene ID: HRGMv2_4232_21_7
Type: CAZyme
Location: 6373 - 7506 (-)
Type: CAZyme
Location: 6373 - 7506 (-)
Gene ID: HRGMv2_4232_21_8
Type: pfam
Location: 7509 - 8651 (-)
Type: pfam
Location: 7509 - 8651 (-)
Gene ID: HRGMv2_4232_21_9
Type: pfam
Location: 8611 - 9294 (-)
Type: pfam
Location: 8611 - 9294 (-)
Gene ID: HRGMv2_4232_21_10
Type: TC
Location: 9297 - 9899 (-)
Type: TC
Location: 9297 - 9899 (-)
Gene ID: HRGMv2_4232_21_11
Type: TC
Location: 9905 - 11800 (-)
Type: TC
Location: 9905 - 11800 (-)
Gene ID: HRGMv2_4232_21_12
Type: TC
Location: 11964 - 12668 (-)
Type: TC
Location: 11964 - 12668 (-)
Gene ID: HRGMv2_4232_21_13
Type: TC
Location: 12680 - 13375 (-)
Type: TC
Location: 12680 - 13375 (-)
Gene ID: HRGMv2_4232_21_14
Type: pfam
Location: 14016 - 14861 (-)
Type: pfam
Location: 14016 - 14861 (-)
Gene ID: HRGMv2_4232_21_15
Type: CAZyme
Location: 14956 - 16365 (-)
Type: CAZyme
Location: 14956 - 16365 (-)
Gene ID: HRGMv2_4232_21_16
Type: TC
Location: 16389 - 18251 (-)
Type: TC
Location: 16389 - 18251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
MOL361
Family
Turicibacteraceae
Genus
Turicibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.