Cluster: HRGMv2_4232_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4232
- CGC Family ID: CGCFAM_05706
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4232_12 | HRGMv2_4232_12_32 | 33483 | 34421 | + | 3.A.1.1.34 |
| TC | HRGMv2_4232_12 | HRGMv2_4232_12_33 | 34437 | 35309 | + | 3.A.1.1.39 |
| pfam | HRGMv2_4232_12 | HRGMv2_4232_12_34 | 35342 | 37339 | + | Yip1 |
| pfam | HRGMv2_4232_12 | HRGMv2_4232_12_35 | 37332 | 39590 | + | DUF5696 |
| TC | HRGMv2_4232_12 | HRGMv2_4232_12_36 | 39568 | 40440 | + | 3.A.1.1.11 |
| TC | HRGMv2_4232_12 | HRGMv2_4232_12_37 | 40461 | 41405 | + | 3.A.1.1.11 |
| TF | HRGMv2_4232_12 | HRGMv2_4232_12_38 | 41533 | 42540 | + | LacI |
| NULL(UNKNOWN) | HRGMv2_4232_12 | HRGMv2_4232_12_39 | 42611 | 43042 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4232_12 | HRGMv2_4232_12_40 | 43296 | 46631 | + | GH94 |
| CAZyme | HRGMv2_4232_12 | HRGMv2_4232_12_41 | 46713 | 48878 | + | GH3 |
| CAZyme | HRGMv2_4232_12 | HRGMv2_4232_12_42 | 48904 | 51315 | + | GH35 |
| CAZyme | HRGMv2_4232_12 | HRGMv2_4232_12_43 | 51615 | 52877 | + | GH144 |
| CAZyme | HRGMv2_4232_12 | HRGMv2_4232_12_44 | 52886 | 54082 | + | GH144 |
Gene ID: HRGMv2_4232_12_32
Type: TC
Location: 33483 - 34421 (+)
Type: TC
Location: 33483 - 34421 (+)
Gene ID: HRGMv2_4232_12_33
Type: TC
Location: 34437 - 35309 (+)
Type: TC
Location: 34437 - 35309 (+)
Gene ID: HRGMv2_4232_12_34
Type: pfam
Location: 35342 - 37339 (+)
Type: pfam
Location: 35342 - 37339 (+)
Gene ID: HRGMv2_4232_12_35
Type: pfam
Location: 37332 - 39590 (+)
Type: pfam
Location: 37332 - 39590 (+)
Gene ID: HRGMv2_4232_12_36
Type: TC
Location: 39568 - 40440 (+)
Type: TC
Location: 39568 - 40440 (+)
Gene ID: HRGMv2_4232_12_37
Type: TC
Location: 40461 - 41405 (+)
Type: TC
Location: 40461 - 41405 (+)
Gene ID: HRGMv2_4232_12_38
Type: TF
Location: 41533 - 42540 (+)
Type: TF
Location: 41533 - 42540 (+)
Gene ID: HRGMv2_4232_12_39
Type:
Location: 42611 - 43042 (-)
Type:
Location: 42611 - 43042 (-)
Gene ID: HRGMv2_4232_12_40
Type: CAZyme
Location: 43296 - 46631 (+)
Type: CAZyme
Location: 43296 - 46631 (+)
Gene ID: HRGMv2_4232_12_41
Type: CAZyme
Location: 46713 - 48878 (+)
Type: CAZyme
Location: 46713 - 48878 (+)
Gene ID: HRGMv2_4232_12_42
Type: CAZyme
Location: 48904 - 51315 (+)
Type: CAZyme
Location: 48904 - 51315 (+)
Gene ID: HRGMv2_4232_12_43
Type: CAZyme
Location: 51615 - 52877 (+)
Type: CAZyme
Location: 51615 - 52877 (+)
Gene ID: HRGMv2_4232_12_44
Type: CAZyme
Location: 52886 - 54082 (+)
Type: CAZyme
Location: 52886 - 54082 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
MOL361
Family
Turicibacteraceae
Genus
Turicibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.